miRNA display CGI


Results 21 - 40 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23612 3' -65.9 NC_005261.1 + 4263 0.72 0.190909
Target:  5'- uCCCCgcgUCCCCCaucUCcggcacgaacacggCCGCGGgCCCCGc -3'
miRNA:   3'- -GGGGaa-AGGGGG---AG--------------GGCGCCgGGGGC- -5'
23612 3' -65.9 NC_005261.1 + 4611 0.76 0.108319
Target:  5'- uCCCCUcggcgucggUCCCCgagUCCC-CGGCCCCCGa -3'
miRNA:   3'- -GGGGAa--------AGGGGg--AGGGcGCCGGGGGC- -5'
23612 3' -65.9 NC_005261.1 + 4955 0.68 0.379123
Target:  5'- gCCCaggcgCCCCCggCCGCGGCgUCCu -3'
miRNA:   3'- -GGGgaaa-GGGGGagGGCGCCGgGGGc -5'
23612 3' -65.9 NC_005261.1 + 5035 0.7 0.264228
Target:  5'- uCCUCUUccuccUCCCCCUCgucgUCGuCGGCCCCg- -3'
miRNA:   3'- -GGGGAA-----AGGGGGAG----GGC-GCCGGGGgc -5'
23612 3' -65.9 NC_005261.1 + 5182 0.66 0.487001
Target:  5'- -gCCgggUCCUCCU-CCG-GGCCCCCc -3'
miRNA:   3'- ggGGaa-AGGGGGAgGGCgCCGGGGGc -5'
23612 3' -65.9 NC_005261.1 + 5691 0.77 0.09348
Target:  5'- uCCCCUcccUCUCCUcCCCGcCGGCCCCCu -3'
miRNA:   3'- -GGGGAa--AGGGGGaGGGC-GCCGGGGGc -5'
23612 3' -65.9 NC_005261.1 + 5994 0.68 0.386841
Target:  5'- uCUCCg---CUCCUCCCGCGGCgagggCUCCGg -3'
miRNA:   3'- -GGGGaaagGGGGAGGGCGCCG-----GGGGC- -5'
23612 3' -65.9 NC_005261.1 + 6032 0.66 0.459884
Target:  5'- cCCCCUUcuucuucuccuucUUCUUCUCCCaaaGgGGCCCCuCGu -3'
miRNA:   3'- -GGGGAA-------------AGGGGGAGGG---CgCCGGGG-GC- -5'
23612 3' -65.9 NC_005261.1 + 6380 0.75 0.135088
Target:  5'- cCCCCUUUCCCCCguuccgcccccuugaCCCGCGcGCguuggCCCGg -3'
miRNA:   3'- -GGGGAAAGGGGGa--------------GGGCGC-CGg----GGGC- -5'
23612 3' -65.9 NC_005261.1 + 6508 0.73 0.167033
Target:  5'- cCCCCUUUCCCCCccuccgccugCCCGUuuGCUCCCc -3'
miRNA:   3'- -GGGGAAAGGGGGa---------GGGCGc-CGGGGGc -5'
23612 3' -65.9 NC_005261.1 + 7003 0.68 0.364
Target:  5'- uCCCCaccCCCCCcCCCgagggaGUGGCCCCa- -3'
miRNA:   3'- -GGGGaaaGGGGGaGGG------CGCCGGGGgc -5'
23612 3' -65.9 NC_005261.1 + 7469 0.67 0.405782
Target:  5'- gCCCC---CCCCCaUCCGCGGucuuaucaccgcugcCCCCCu -3'
miRNA:   3'- -GGGGaaaGGGGGaGGGCGCC---------------GGGGGc -5'
23612 3' -65.9 NC_005261.1 + 7705 0.69 0.307775
Target:  5'- aUUCUUgcucUCUCUCUCCCGgGGCCCCa- -3'
miRNA:   3'- gGGGAA----AGGGGGAGGGCgCCGGGGgc -5'
23612 3' -65.9 NC_005261.1 + 7733 0.68 0.379123
Target:  5'- aCCCCUcaucguUUCCCgCUCCacccuGCGGUCCggCCGu -3'
miRNA:   3'- -GGGGA------AAGGGgGAGGg----CGCCGGG--GGC- -5'
23612 3' -65.9 NC_005261.1 + 8322 0.69 0.301232
Target:  5'- aCCCUcuccUCCCCCgaCCCGCGcGCCgugCCGg -3'
miRNA:   3'- gGGGAa---AGGGGGa-GGGCGC-CGGg--GGC- -5'
23612 3' -65.9 NC_005261.1 + 9433 0.7 0.294797
Target:  5'- gCCCCccaCCCCCaCCCGgGcaaGCCCCCu -3'
miRNA:   3'- -GGGGaaaGGGGGaGGGCgC---CGGGGGc -5'
23612 3' -65.9 NC_005261.1 + 9696 0.67 0.394662
Target:  5'- aCCCCgcgcuccgCCCCCUCCCcuagcaGCaGCgCUCCGc -3'
miRNA:   3'- -GGGGaaa-----GGGGGAGGG------CGcCG-GGGGC- -5'
23612 3' -65.9 NC_005261.1 + 9972 0.69 0.313755
Target:  5'- gCCCg--CCCCC-CCggacgcgccucggCGCGGCCaCCCGc -3'
miRNA:   3'- gGGGaaaGGGGGaGG-------------GCGCCGG-GGGC- -5'
23612 3' -65.9 NC_005261.1 + 10070 0.68 0.354396
Target:  5'- uCCCCUcUCCCuuccagccgcccgaCC-CCCGCcGCgCCCCGg -3'
miRNA:   3'- -GGGGAaAGGG--------------GGaGGGCGcCG-GGGGC- -5'
23612 3' -65.9 NC_005261.1 + 10727 0.67 0.426947
Target:  5'- cCCCCUcUUCCUCCg-CCGCcuccucccGGUCCUCGg -3'
miRNA:   3'- -GGGGA-AAGGGGGagGGCG--------CCGGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.