miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23612 3' -65.9 NC_005261.1 + 1 0.66 0.478169
Target:  5'- cCCCCaccgCCCCUCgugcaGCGGgCCCCGc -3'
miRNA:   3'- -GGGGaaagGGGGAGgg---CGCCgGGGGC- -5'
23612 3' -65.9 NC_005261.1 + 102 0.71 0.225816
Target:  5'- cCCCCgggCCCCgCcgCCCGCGccggcgccGCCCCUGg -3'
miRNA:   3'- -GGGGaaaGGGG-Ga-GGGCGC--------CGGGGGC- -5'
23612 3' -65.9 NC_005261.1 + 213 0.7 0.276137
Target:  5'- gCCgCCg--CCCCUggugCUCGCGGgCCCCGc -3'
miRNA:   3'- -GG-GGaaaGGGGGa---GGGCGCCgGGGGC- -5'
23612 3' -65.9 NC_005261.1 + 588 0.68 0.379123
Target:  5'- uCCCCccUCCCCCUCUguuCGCGGagggcgagUgCCCGa -3'
miRNA:   3'- -GGGGaaAGGGGGAGG---GCGCC--------GgGGGC- -5'
23612 3' -65.9 NC_005261.1 + 708 0.8 0.056781
Target:  5'- cCCCCUccCCCCUUCCCcgguCGGCCCCCu -3'
miRNA:   3'- -GGGGAaaGGGGGAGGGc---GCCGGGGGc -5'
23612 3' -65.9 NC_005261.1 + 749 0.67 0.410608
Target:  5'- cCUCCUcUCCCgCCUCCCGUuuCCCUCc -3'
miRNA:   3'- -GGGGAaAGGG-GGAGGGCGccGGGGGc -5'
23612 3' -65.9 NC_005261.1 + 784 0.76 0.113739
Target:  5'- uCCCCgccCCCCC-CCCGCGccgccGCCCCCc -3'
miRNA:   3'- -GGGGaaaGGGGGaGGGCGC-----CGGGGGc -5'
23612 3' -65.9 NC_005261.1 + 821 0.67 0.409801
Target:  5'- gCCCCU---UCCCUCCCGaUGGagagaacCCCCCa -3'
miRNA:   3'- -GGGGAaagGGGGAGGGC-GCC-------GGGGGc -5'
23612 3' -65.9 NC_005261.1 + 924 0.66 0.469416
Target:  5'- uUCCUUUgCCCC-CCCaGCcgGGCCUCCc -3'
miRNA:   3'- gGGGAAAgGGGGaGGG-CG--CCGGGGGc -5'
23612 3' -65.9 NC_005261.1 + 1347 0.66 0.504891
Target:  5'- gCgCCUgcaCCagcgUCUCCCGCGGgCCCUGg -3'
miRNA:   3'- -GgGGAaa-GGg---GGAGGGCGCCgGGGGC- -5'
23612 3' -65.9 NC_005261.1 + 2865 0.71 0.241666
Target:  5'- gUCCCUUucuuccuccuccUCCUCCUCCU-CGGCCCCg- -3'
miRNA:   3'- -GGGGAA------------AGGGGGAGGGcGCCGGGGgc -5'
23612 3' -65.9 NC_005261.1 + 2902 0.71 0.258432
Target:  5'- uCCCCgggCCCCCccagcUCCUcCGGCCCCa- -3'
miRNA:   3'- -GGGGaaaGGGGG-----AGGGcGCCGGGGgc -5'
23612 3' -65.9 NC_005261.1 + 3030 0.68 0.386841
Target:  5'- uCCCCguccccgUCCCCgUCCC-CG-UCCCCGu -3'
miRNA:   3'- -GGGGaa-----AGGGGgAGGGcGCcGGGGGC- -5'
23612 3' -65.9 NC_005261.1 + 3060 0.68 0.386841
Target:  5'- uCCCCguccccgUCCCCgUCCC-CG-UCCCCGu -3'
miRNA:   3'- -GGGGaa-----AGGGGgAGGGcGCcGGGGGC- -5'
23612 3' -65.9 NC_005261.1 + 3090 0.68 0.386841
Target:  5'- uCCCCguccccgUCCCCgUCCC-CG-UCCCCGu -3'
miRNA:   3'- -GGGGaa-----AGGGGgAGGGcGCcGGGGGC- -5'
23612 3' -65.9 NC_005261.1 + 3132 0.69 0.301232
Target:  5'- uCCCCguccccgUCCCCgUcCCCGUccgaGGCCCCgGc -3'
miRNA:   3'- -GGGGaa-----AGGGGgA-GGGCG----CCGGGGgC- -5'
23612 3' -65.9 NC_005261.1 + 3211 0.69 0.342109
Target:  5'- cCUCCUccUCCCCCUCgcugguuuCCGaGGCCCCgGc -3'
miRNA:   3'- -GGGGAa-AGGGGGAG--------GGCgCCGGGGgC- -5'
23612 3' -65.9 NC_005261.1 + 3247 0.67 0.426947
Target:  5'- cCUCCUcgUCCCC-CCCGUccCCCCCGu -3'
miRNA:   3'- -GGGGAaaGGGGGaGGGCGccGGGGGC- -5'
23612 3' -65.9 NC_005261.1 + 3282 0.74 0.144826
Target:  5'- uCCCCguccUCCUCCagguccgCCCGCGGUgCCCCGg -3'
miRNA:   3'- -GGGGaa--AGGGGGa------GGGCGCCG-GGGGC- -5'
23612 3' -65.9 NC_005261.1 + 3328 0.68 0.364
Target:  5'- cCUCCaccUCCaCCCgCgCCGCGGCgCCCGg -3'
miRNA:   3'- -GGGGaa-AGG-GGGaG-GGCGCCGgGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.