miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23612 3' -65.9 NC_005261.1 + 83987 1.1 0.000374
Target:  5'- cCCCCUUUCCCCCUCCCGCGGCCCCCGg -3'
miRNA:   3'- -GGGGAAAGGGGGAGGGCGCCGGGGGC- -5'
23612 3' -65.9 NC_005261.1 + 708 0.8 0.056781
Target:  5'- cCCCCUccCCCCUUCCCcgguCGGCCCCCu -3'
miRNA:   3'- -GGGGAaaGGGGGAGGGc---GCCGGGGGc -5'
23612 3' -65.9 NC_005261.1 + 109533 0.78 0.08468
Target:  5'- gCCCgccgcgggCCCCCUCgccacaaccgCCGCGGCCCCCc -3'
miRNA:   3'- gGGGaaa-----GGGGGAG----------GGCGCCGGGGGc -5'
23612 3' -65.9 NC_005261.1 + 19987 0.77 0.086803
Target:  5'- gCCCUaucgUCCCCggCCGCGGCCCCUGa -3'
miRNA:   3'- gGGGAaa--GGGGGagGGCGCCGGGGGC- -5'
23612 3' -65.9 NC_005261.1 + 11154 0.77 0.09348
Target:  5'- cCCCCUccccUCCCCguauCUCgCCGCGGCCCCgGc -3'
miRNA:   3'- -GGGGAa---AGGGG----GAG-GGCGCCGGGGgC- -5'
23612 3' -65.9 NC_005261.1 + 5691 0.77 0.09348
Target:  5'- uCCCCUcccUCUCCUcCCCGcCGGCCCCCu -3'
miRNA:   3'- -GGGGAa--AGGGGGaGGGC-GCCGGGGGc -5'
23612 3' -65.9 NC_005261.1 + 39578 0.76 0.107528
Target:  5'- cCCCC--UCUCCCUCCCcagcgccgagcgccGCGcGCCCCCGc -3'
miRNA:   3'- -GGGGaaAGGGGGAGGG--------------CGC-CGGGGGC- -5'
23612 3' -65.9 NC_005261.1 + 24591 0.76 0.108319
Target:  5'- aCCCg--CCCCCagUCCCgGCGGCCCUCu -3'
miRNA:   3'- gGGGaaaGGGGG--AGGG-CGCCGGGGGc -5'
23612 3' -65.9 NC_005261.1 + 22271 0.76 0.108319
Target:  5'- uUCUUUUUCCCUCUUCCGCcGCCCCCc -3'
miRNA:   3'- -GGGGAAAGGGGGAGGGCGcCGGGGGc -5'
23612 3' -65.9 NC_005261.1 + 4611 0.76 0.108319
Target:  5'- uCCCCUcggcgucggUCCCCgagUCCC-CGGCCCCCGa -3'
miRNA:   3'- -GGGGAa--------AGGGGg--AGGGcGCCGGGGGC- -5'
23612 3' -65.9 NC_005261.1 + 784 0.76 0.113739
Target:  5'- uCCCCgccCCCCC-CCCGCGccgccGCCCCCc -3'
miRNA:   3'- -GGGGaaaGGGGGaGGGCGC-----CGGGGGc -5'
23612 3' -65.9 NC_005261.1 + 119730 0.76 0.113739
Target:  5'- gCCCaa-CCCCUUCCCGCGcGCCCCg- -3'
miRNA:   3'- gGGGaaaGGGGGAGGGCGC-CGGGGgc -5'
23612 3' -65.9 NC_005261.1 + 114883 0.76 0.119412
Target:  5'- uUCCCUUuucUCCCCCUuccccCCUGCuGCCCCCu -3'
miRNA:   3'- -GGGGAA---AGGGGGA-----GGGCGcCGGGGGc -5'
23612 3' -65.9 NC_005261.1 + 78775 0.76 0.119412
Target:  5'- gCCCCg--CCCCCUCCCccgccgcaGgGGCUCCCu -3'
miRNA:   3'- -GGGGaaaGGGGGAGGG--------CgCCGGGGGc -5'
23612 3' -65.9 NC_005261.1 + 33246 0.75 0.125347
Target:  5'- uCCCCgcgccaUCCCgCCggCCguCGCGGCCCCCGu -3'
miRNA:   3'- -GGGGaa----AGGG-GGa-GG--GCGCCGGGGGC- -5'
23612 3' -65.9 NC_005261.1 + 6380 0.75 0.135088
Target:  5'- cCCCCUUUCCCCCguuccgcccccuugaCCCGCGcGCguuggCCCGg -3'
miRNA:   3'- -GGGGAAAGGGGGa--------------GGGCGC-CGg----GGGC- -5'
23612 3' -65.9 NC_005261.1 + 37697 0.74 0.144826
Target:  5'- gCCCCggcgccuucgUCCCCCaagCCCuCGGCCCgCCGg -3'
miRNA:   3'- -GGGGaa--------AGGGGGa--GGGcGCCGGG-GGC- -5'
23612 3' -65.9 NC_005261.1 + 3282 0.74 0.144826
Target:  5'- uCCCCguccUCCUCCagguccgCCCGCGGUgCCCCGg -3'
miRNA:   3'- -GGGGaa--AGGGGGa------GGGCGCCG-GGGGC- -5'
23612 3' -65.9 NC_005261.1 + 29183 0.74 0.14833
Target:  5'- gCCCgg-CgCCCUCgCCGCGGCgCCCGc -3'
miRNA:   3'- gGGGaaaGgGGGAG-GGCGCCGgGGGC- -5'
23612 3' -65.9 NC_005261.1 + 67943 0.74 0.151912
Target:  5'- cCCCCgccggCCCgCUCgCGCGGCCgCCGc -3'
miRNA:   3'- -GGGGaaa--GGGgGAGgGCGCCGGgGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.