miRNA display CGI


Results 1 - 20 of 154 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23612 3' -65.9 NC_005261.1 + 137896 0.7 0.276137
Target:  5'- gCCgCCg--CCCCUggugCUCGCGGgCCCCGc -3'
miRNA:   3'- -GG-GGaaaGGGGGa---GGGCGCCgGGGGC- -5'
23612 3' -65.9 NC_005261.1 + 137785 0.71 0.225816
Target:  5'- cCCCCgggCCCCgCcgCCCGCGccggcgccGCCCCUGg -3'
miRNA:   3'- -GGGGaaaGGGG-Ga-GGGCGC--------CGGGGGC- -5'
23612 3' -65.9 NC_005261.1 + 137675 0.7 0.27013
Target:  5'- aCCCCggggCCCCCcaccgCCCcucgugcaGCGGgCCCCGc -3'
miRNA:   3'- -GGGGaaa-GGGGGa----GGG--------CGCCgGGGGC- -5'
23612 3' -65.9 NC_005261.1 + 137592 0.66 0.504891
Target:  5'- gCCCC--UCCCCCacCCCGC-GCCCa-- -3'
miRNA:   3'- -GGGGaaAGGGGGa-GGGCGcCGGGggc -5'
23612 3' -65.9 NC_005261.1 + 133768 0.66 0.495909
Target:  5'- gCCCCgugccUCCacgCCCUCgUGCGGCgcaUCCCGc -3'
miRNA:   3'- -GGGGaa---AGG---GGGAGgGCGCCG---GGGGC- -5'
23612 3' -65.9 NC_005261.1 + 132927 0.69 0.321184
Target:  5'- gCUCCUg--CCCUUCUaCGUGGUCCCCGa -3'
miRNA:   3'- -GGGGAaagGGGGAGG-GCGCCGGGGGC- -5'
23612 3' -65.9 NC_005261.1 + 132456 0.67 0.426947
Target:  5'- gCCCCUcggCCgCCCUCCgCGCcGGCagcgCCUCGc -3'
miRNA:   3'- -GGGGAaa-GG-GGGAGG-GCG-CCG----GGGGC- -5'
23612 3' -65.9 NC_005261.1 + 131444 0.66 0.504891
Target:  5'- cCCCCUUgcgCCgCgCCUCgCGgGcGCCuCCCGc -3'
miRNA:   3'- -GGGGAAa--GG-G-GGAGgGCgC-CGG-GGGC- -5'
23612 3' -65.9 NC_005261.1 + 130275 0.67 0.443666
Target:  5'- gUCCCgcgcgCCCCCgccacgCCCGCacaGCCaCCCa -3'
miRNA:   3'- -GGGGaaa--GGGGGa-----GGGCGc--CGG-GGGc -5'
23612 3' -65.9 NC_005261.1 + 129272 0.72 0.215746
Target:  5'- uUCCCgacaagCCCCCgcgccgcCCCGCccGCCCCCGg -3'
miRNA:   3'- -GGGGaaa---GGGGGa------GGGCGc-CGGGGGC- -5'
23612 3' -65.9 NC_005261.1 + 128207 0.68 0.379123
Target:  5'- aCCCCg--CCCCCgcaCCGCuuucuuauugGGCCCgCCc -3'
miRNA:   3'- -GGGGaaaGGGGGag-GGCG----------CCGGG-GGc -5'
23612 3' -65.9 NC_005261.1 + 121848 0.66 0.504891
Target:  5'- -aCCgg-CgCCagcagCCCGCGGCUCCCGc -3'
miRNA:   3'- ggGGaaaGgGGga---GGGCGCCGGGGGC- -5'
23612 3' -65.9 NC_005261.1 + 121285 0.69 0.337846
Target:  5'- gCCCCggccucgcucucgUCCCCgUCCC-CGGCUCCgGc -3'
miRNA:   3'- -GGGGaa-----------AGGGGgAGGGcGCCGGGGgC- -5'
23612 3' -65.9 NC_005261.1 + 119730 0.76 0.113739
Target:  5'- gCCCaa-CCCCUUCCCGCGcGCCCCg- -3'
miRNA:   3'- gGGGaaaGGGGGAGGGCGC-CGGGGgc -5'
23612 3' -65.9 NC_005261.1 + 119526 0.68 0.386841
Target:  5'- gCCCCggUCCCCgCggCCGagcaaGGCCCCg- -3'
miRNA:   3'- -GGGGaaAGGGG-GagGGCg----CCGGGGgc -5'
23612 3' -65.9 NC_005261.1 + 117669 0.66 0.460746
Target:  5'- gCCCCgccgcgCCCggCCgggCCCGCGGCgaggccggCCCUGa -3'
miRNA:   3'- -GGGGaaa---GGG--GGa--GGGCGCCG--------GGGGC- -5'
23612 3' -65.9 NC_005261.1 + 116626 0.66 0.492337
Target:  5'- gCCCg--CCCgCCgacgagggcgaggCCCGCGcGCCCgCCGc -3'
miRNA:   3'- gGGGaaaGGG-GGa------------GGGCGC-CGGG-GGC- -5'
23612 3' -65.9 NC_005261.1 + 114883 0.76 0.119412
Target:  5'- uUCCCUUuucUCCCCCUuccccCCUGCuGCCCCCu -3'
miRNA:   3'- -GGGGAA---AGGGGGA-----GGGCGcCGGGGGc -5'
23612 3' -65.9 NC_005261.1 + 109597 0.67 0.418729
Target:  5'- uUCCCUUcCCCCCccCCCGC-GCUCgCCa -3'
miRNA:   3'- -GGGGAAaGGGGGa-GGGCGcCGGG-GGc -5'
23612 3' -65.9 NC_005261.1 + 109533 0.78 0.08468
Target:  5'- gCCCgccgcgggCCCCCUCgccacaaccgCCGCGGCCCCCc -3'
miRNA:   3'- gGGGaaa-----GGGGGAG----------GGCGCCGGGGGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.