Results 21 - 40 of 154 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23612 | 3' | -65.9 | NC_005261.1 | + | 133768 | 0.66 | 0.495909 |
Target: 5'- gCCCCgugccUCCacgCCCUCgUGCGGCgcaUCCCGc -3' miRNA: 3'- -GGGGaa---AGG---GGGAGgGCGCCG---GGGGC- -5' |
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23612 | 3' | -65.9 | NC_005261.1 | + | 84654 | 0.66 | 0.495909 |
Target: 5'- gUCCCggcuggcgCCgCCCgcgCCCGCGGCCgCg- -3' miRNA: 3'- -GGGGaaa-----GG-GGGa--GGGCGCCGGgGgc -5' |
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23612 | 3' | -65.9 | NC_005261.1 | + | 116626 | 0.66 | 0.492337 |
Target: 5'- gCCCg--CCCgCCgacgagggcgaggCCCGCGcGCCCgCCGc -3' miRNA: 3'- gGGGaaaGGG-GGa------------GGGCGC-CGGG-GGC- -5' |
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23612 | 3' | -65.9 | NC_005261.1 | + | 72722 | 0.66 | 0.487001 |
Target: 5'- gCCCgccgCCCCgUCCgCGCGGgCggCCCGc -3' miRNA: 3'- gGGGaaa-GGGGgAGG-GCGCCgG--GGGC- -5' |
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23612 | 3' | -65.9 | NC_005261.1 | + | 38585 | 0.66 | 0.487001 |
Target: 5'- aUCC--UCUCCCUgCUgGCGGCCCgCGg -3' miRNA: 3'- gGGGaaAGGGGGA-GGgCGCCGGGgGC- -5' |
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23612 | 3' | -65.9 | NC_005261.1 | + | 62023 | 0.67 | 0.426947 |
Target: 5'- gCgCCgucugCCgUCCUCCCGCGGCUCggCCGg -3' miRNA: 3'- -GgGGaaa--GG-GGGAGGGCGCCGGG--GGC- -5' |
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23612 | 3' | -65.9 | NC_005261.1 | + | 22635 | 0.67 | 0.426947 |
Target: 5'- gCCCCg--UCCCgUCCCuagacgcgcugGCGGCgCCUGg -3' miRNA: 3'- -GGGGaaaGGGGgAGGG-----------CGCCGgGGGC- -5' |
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23612 | 3' | -65.9 | NC_005261.1 | + | 3247 | 0.67 | 0.426947 |
Target: 5'- cCUCCUcgUCCCC-CCCGUccCCCCCGu -3' miRNA: 3'- -GGGGAaaGGGGGaGGGCGccGGGGGC- -5' |
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23612 | 3' | -65.9 | NC_005261.1 | + | 100089 | 0.67 | 0.423648 |
Target: 5'- gCCCCUcgCCgCCgccgcugccgccgCCCaGCGGCgCCCGc -3' miRNA: 3'- -GGGGAaaGGgGGa------------GGG-CGCCGgGGGC- -5' |
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23612 | 3' | -65.9 | NC_005261.1 | + | 81880 | 0.67 | 0.418729 |
Target: 5'- aCCCac-CCgCCC-CCUGCGGCCgCCa -3' miRNA: 3'- gGGGaaaGG-GGGaGGGCGCCGGgGGc -5' |
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23612 | 3' | -65.9 | NC_005261.1 | + | 109597 | 0.67 | 0.418729 |
Target: 5'- uUCCCUUcCCCCCccCCCGC-GCUCgCCa -3' miRNA: 3'- -GGGGAAaGGGGGa-GGGCGcCGGG-GGc -5' |
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23612 | 3' | -65.9 | NC_005261.1 | + | 132456 | 0.67 | 0.426947 |
Target: 5'- gCCCCUcggCCgCCCUCCgCGCcGGCagcgCCUCGc -3' miRNA: 3'- -GGGGAaa-GG-GGGAGG-GCG-CCG----GGGGC- -5' |
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23612 | 3' | -65.9 | NC_005261.1 | + | 10727 | 0.67 | 0.426947 |
Target: 5'- cCCCCUcUUCCUCCg-CCGCcuccucccGGUCCUCGg -3' miRNA: 3'- -GGGGA-AAGGGGGagGGCG--------CCGGGGGC- -5' |
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23612 | 3' | -65.9 | NC_005261.1 | + | 31233 | 0.67 | 0.43526 |
Target: 5'- aCCCgCUcUUCCCCgagCCC-UGGCgCCCGg -3' miRNA: 3'- -GGG-GAaAGGGGGa--GGGcGCCGgGGGC- -5' |
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23612 | 3' | -65.9 | NC_005261.1 | + | 51087 | 0.67 | 0.43526 |
Target: 5'- gCCCUgUUCCUgCUCgccgUCGCGGCCUuuGa -3' miRNA: 3'- gGGGA-AAGGGgGAG----GGCGCCGGGggC- -5' |
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23612 | 3' | -65.9 | NC_005261.1 | + | 52504 | 0.67 | 0.43526 |
Target: 5'- gCCgCCUgUCCCaugaCUCCuUGaCGGCCgCCCGa -3' miRNA: 3'- -GG-GGAaAGGGg---GAGG-GC-GCCGG-GGGC- -5' |
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23612 | 3' | -65.9 | NC_005261.1 | + | 35894 | 0.67 | 0.442821 |
Target: 5'- cCUCCUaaagaCCCCCg-CCGCGGCagcgcggCCCCGc -3' miRNA: 3'- -GGGGAaa---GGGGGagGGCGCCG-------GGGGC- -5' |
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23612 | 3' | -65.9 | NC_005261.1 | + | 130275 | 0.67 | 0.443666 |
Target: 5'- gUCCCgcgcgCCCCCgccacgCCCGCacaGCCaCCCa -3' miRNA: 3'- -GGGGaaa--GGGGGa-----GGGCGc--CGG-GGGc -5' |
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23612 | 3' | -65.9 | NC_005261.1 | + | 105049 | 0.67 | 0.443666 |
Target: 5'- cCCCCg---CCCCUCCC-CaGCCCUCc -3' miRNA: 3'- -GGGGaaagGGGGAGGGcGcCGGGGGc -5' |
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23612 | 3' | -65.9 | NC_005261.1 | + | 68524 | 0.67 | 0.410608 |
Target: 5'- gCCUgccggcgCCgCCggcgCCCGCGcGCCCCCu -3' miRNA: 3'- gGGGaaa----GGgGGa---GGGCGC-CGGGGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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