miRNA display CGI


Results 41 - 60 of 355 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23616 5' -59.5 NC_005261.1 + 31987 0.66 0.758809
Target:  5'- cCGCGCAccGCGgugCcCGUgCCGCCgCGCGa -3'
miRNA:   3'- -GCGCGU--CGUa--GaGCA-GGCGGaGCGCg -5'
23616 5' -59.5 NC_005261.1 + 133325 0.66 0.758809
Target:  5'- uCGCGCAGC-UCcUG-CCGgCaCGCGCg -3'
miRNA:   3'- -GCGCGUCGuAGaGCaGGCgGaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 124795 0.66 0.758809
Target:  5'- -cCGaCAGCcgCUCGUCgCGCUcuaggUGCGCg -3'
miRNA:   3'- gcGC-GUCGuaGAGCAG-GCGGa----GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 122664 0.66 0.758809
Target:  5'- gGCGCgaagAGCAUCaCGUUCGUCagcUGCGCc -3'
miRNA:   3'- gCGCG----UCGUAGaGCAGGCGGa--GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 66627 0.66 0.753193
Target:  5'- uGCGCAuggccgacgagaccuGCGUCccgUCGgCCGCCUCcucCGCg -3'
miRNA:   3'- gCGCGU---------------CGUAG---AGCaGGCGGAGc--GCG- -5'
23616 5' -59.5 NC_005261.1 + 105909 0.66 0.74943
Target:  5'- gGCGCgGGCcgCUCGcgCgCGCCcacgcCGCGCc -3'
miRNA:   3'- gCGCG-UCGuaGAGCa-G-GCGGa----GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 85541 0.66 0.74943
Target:  5'- gCGCGCgGGCggCUcCGUCUGCggCGcCGCg -3'
miRNA:   3'- -GCGCG-UCGuaGA-GCAGGCGgaGC-GCG- -5'
23616 5' -59.5 NC_005261.1 + 115825 0.66 0.74943
Target:  5'- aCGCGguGCGccagcUUgggcgCGUUgGCC-CGCGCg -3'
miRNA:   3'- -GCGCguCGU-----AGa----GCAGgCGGaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 131450 0.66 0.74943
Target:  5'- uGCGCcGCGcCUCGcgggcgccucCCGCCUC-CGCg -3'
miRNA:   3'- gCGCGuCGUaGAGCa---------GGCGGAGcGCG- -5'
23616 5' -59.5 NC_005261.1 + 133653 0.66 0.74943
Target:  5'- uGCGCgAGCG-CUgCGUgcUCGCCUCcgGCGCc -3'
miRNA:   3'- gCGCG-UCGUaGA-GCA--GGCGGAG--CGCG- -5'
23616 5' -59.5 NC_005261.1 + 35060 0.66 0.74943
Target:  5'- cCGCGCGGCggcgGUCUCcgcgCCcCCUCGCc- -3'
miRNA:   3'- -GCGCGUCG----UAGAGca--GGcGGAGCGcg -5'
23616 5' -59.5 NC_005261.1 + 68183 0.66 0.74943
Target:  5'- gCGCGCcGCGggccccCUCGcccccgCCGCCg-GCGCg -3'
miRNA:   3'- -GCGCGuCGUa-----GAGCa-----GGCGGagCGCG- -5'
23616 5' -59.5 NC_005261.1 + 82400 0.66 0.74943
Target:  5'- cCGCGgGGCcg-UCGUCC-CC-CGCGCc -3'
miRNA:   3'- -GCGCgUCGuagAGCAGGcGGaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 86092 0.66 0.74943
Target:  5'- cCGCGCGu--UCUCGUCggCGCC-CGgGCg -3'
miRNA:   3'- -GCGCGUcguAGAGCAG--GCGGaGCgCG- -5'
23616 5' -59.5 NC_005261.1 + 108581 0.66 0.74943
Target:  5'- gCGCGCgaaGGCGUuggcCUCGcCCacgggcaccagcGCCUCGgGCg -3'
miRNA:   3'- -GCGCG---UCGUA----GAGCaGG------------CGGAGCgCG- -5'
23616 5' -59.5 NC_005261.1 + 115445 0.66 0.74943
Target:  5'- uCGCGCucGCGgccggaCUCcUCCGCCUCGgugucgguCGCg -3'
miRNA:   3'- -GCGCGu-CGUa-----GAGcAGGCGGAGC--------GCG- -5'
23616 5' -59.5 NC_005261.1 + 67774 0.66 0.748486
Target:  5'- gGCGCcgcccccGGCcgccccCUCcUCCGCCUCgGCGCc -3'
miRNA:   3'- gCGCG-------UCGua----GAGcAGGCGGAG-CGCG- -5'
23616 5' -59.5 NC_005261.1 + 97550 0.66 0.746596
Target:  5'- gGCGguGCcggCcCGUCCGCCcgggguuggcucggUgGCGCg -3'
miRNA:   3'- gCGCguCGua-GaGCAGGCGG--------------AgCGCG- -5'
23616 5' -59.5 NC_005261.1 + 94611 0.66 0.743754
Target:  5'- aGCGC-GCGccCUCGccgCCGCCggcgccgucgucggCGCGCg -3'
miRNA:   3'- gCGCGuCGUa-GAGCa--GGCGGa-------------GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 133590 0.66 0.739952
Target:  5'- cCGCGCuGGCGcugCUCacgGcCCaCCUCGCGCu -3'
miRNA:   3'- -GCGCG-UCGUa--GAG---CaGGcGGAGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.