miRNA display CGI


Results 21 - 40 of 355 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23616 5' -59.5 NC_005261.1 + 11122 0.67 0.671574
Target:  5'- gCGCcgGCAGCGUg-CG-CCGCCUC-CGCc -3'
miRNA:   3'- -GCG--CGUCGUAgaGCaGGCGGAGcGCG- -5'
23616 5' -59.5 NC_005261.1 + 11863 0.67 0.711015
Target:  5'- aGCGCgAGCGUCagcugCGgggcgagcCCGCCcgcaCGCGCg -3'
miRNA:   3'- gCGCG-UCGUAGa----GCa-------GGCGGa---GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 11945 0.71 0.457825
Target:  5'- gCGcCGCGGCggCUCGcCCGgCgCGCGCu -3'
miRNA:   3'- -GC-GCGUCGuaGAGCaGGCgGaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 12015 0.68 0.611644
Target:  5'- cCGUGaAGCG-CUCGcCCGCgaCGCGCu -3'
miRNA:   3'- -GCGCgUCGUaGAGCaGGCGgaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 12069 0.67 0.711015
Target:  5'- gGUGCGGCAgcggCGUCCGCgccggggcggCUCaaagGCGCg -3'
miRNA:   3'- gCGCGUCGUaga-GCAGGCG----------GAG----CGCG- -5'
23616 5' -59.5 NC_005261.1 + 12278 0.69 0.601665
Target:  5'- uCGCuguaGUAGCAgUCcgCGUCCGCCgCGgGCa -3'
miRNA:   3'- -GCG----CGUCGU-AGa-GCAGGCGGaGCgCG- -5'
23616 5' -59.5 NC_005261.1 + 14458 0.66 0.777237
Target:  5'- gCGCGCGGCGgagCUCGcgCUGguCCUCcaaCGCg -3'
miRNA:   3'- -GCGCGUCGUa--GAGCa-GGC--GGAGc--GCG- -5'
23616 5' -59.5 NC_005261.1 + 14762 0.68 0.651637
Target:  5'- cCGCGCcGCGaCagGggggCCGCCcCGCGCa -3'
miRNA:   3'- -GCGCGuCGUaGagCa---GGCGGaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 15171 0.69 0.581777
Target:  5'- gGCGUAGCGgcggCggcgcccgCGggaaacgCCGCCaUCGCGCg -3'
miRNA:   3'- gCGCGUCGUa---Ga-------GCa------GGCGG-AGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 15373 0.67 0.671574
Target:  5'- gGCGCucGGCGccCUCGgcgCCGCCgucgaugccgaCGCGCa -3'
miRNA:   3'- gCGCG--UCGUa-GAGCa--GGCGGa----------GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 15522 0.66 0.758809
Target:  5'- gCGUGCAgGCAggagCggaaggcgUCGUUCGCgaCGCGCg -3'
miRNA:   3'- -GCGCGU-CGUa---G--------AGCAGGCGgaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 15619 0.68 0.611644
Target:  5'- aGCGCAGCAgCUCGacggucCCGUUguaGCGCc -3'
miRNA:   3'- gCGCGUCGUaGAGCa-----GGCGGag-CGCG- -5'
23616 5' -59.5 NC_005261.1 + 15745 0.71 0.43997
Target:  5'- cCGCGC-GCAggcCGaCCGCCUCGcCGCg -3'
miRNA:   3'- -GCGCGuCGUagaGCaGGCGGAGC-GCG- -5'
23616 5' -59.5 NC_005261.1 + 15892 0.71 0.448848
Target:  5'- aCGCGCGGgcgcuuUAUCUC--CCGCCcCGCGCa -3'
miRNA:   3'- -GCGCGUC------GUAGAGcaGGCGGaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 17004 0.72 0.431192
Target:  5'- aGCGcCAGCAUgUCGcacgcggCCGCgCUCGuCGCg -3'
miRNA:   3'- gCGC-GUCGUAgAGCa------GGCG-GAGC-GCG- -5'
23616 5' -59.5 NC_005261.1 + 17793 0.72 0.422518
Target:  5'- cCGC-CAaCAUCUCGcCgGUCUCGCGCa -3'
miRNA:   3'- -GCGcGUcGUAGAGCaGgCGGAGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 18347 0.68 0.621638
Target:  5'- gGCGCAGCAcgagCgaCGUcCCGCUaaGCGCg -3'
miRNA:   3'- gCGCGUCGUa---Ga-GCA-GGCGGagCGCG- -5'
23616 5' -59.5 NC_005261.1 + 18594 0.75 0.266701
Target:  5'- gGCGCAGCcgUgcgaggUGUCCGUCgCGCGCg -3'
miRNA:   3'- gCGCGUCGuaGa-----GCAGGCGGaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 18807 0.66 0.776327
Target:  5'- aGCgGCGGCGggcaugauugcgcUCUCGUgcUCGCgCUCGUGUc -3'
miRNA:   3'- gCG-CGUCGU-------------AGAGCA--GGCG-GAGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 19071 0.68 0.611644
Target:  5'- uGCGCGGC-UCUCGg-CGCgugCUUGCGUg -3'
miRNA:   3'- gCGCGUCGuAGAGCagGCG---GAGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.