miRNA display CGI


Results 1 - 20 of 355 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23616 5' -59.5 NC_005261.1 + 546 0.67 0.671574
Target:  5'- gGCGgaCGGCggCUCGgCCGCCgCGCGg -3'
miRNA:   3'- gCGC--GUCGuaGAGCaGGCGGaGCGCg -5'
23616 5' -59.5 NC_005261.1 + 1503 0.68 0.621638
Target:  5'- cCGCGgcCGGCAgCUCGUCgggCGCCagcuccagCGCGCg -3'
miRNA:   3'- -GCGC--GUCGUaGAGCAG---GCGGa-------GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 1600 0.72 0.397137
Target:  5'- gGCGCGGUggCUgG-CCGCCUCGCc- -3'
miRNA:   3'- gCGCGUCGuaGAgCaGGCGGAGCGcg -5'
23616 5' -59.5 NC_005261.1 + 1718 0.67 0.691389
Target:  5'- uCGCGCGGCGgcaCGggcaCCGCggUGCGCg -3'
miRNA:   3'- -GCGCGUCGUagaGCa---GGCGgaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 2262 0.66 0.730385
Target:  5'- cCGC-CGGCG-CUCGUCCucGCCgggCgGCGCc -3'
miRNA:   3'- -GCGcGUCGUaGAGCAGG--CGGa--G-CGCG- -5'
23616 5' -59.5 NC_005261.1 + 2420 0.7 0.504069
Target:  5'- cCGCGCGGCGgcgggccgcgaUCUCGgccagCGCCUCGgGg -3'
miRNA:   3'- -GCGCGUCGU-----------AGAGCag---GCGGAGCgCg -5'
23616 5' -59.5 NC_005261.1 + 3427 0.67 0.681501
Target:  5'- gCGCGCgggccAGCGUCcaggCGggcgcgcgggCCGCCgcgcCGCGCg -3'
miRNA:   3'- -GCGCG-----UCGUAGa---GCa---------GGCGGa---GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 3513 0.74 0.312874
Target:  5'- aGCGCGGCcgCcuccagcgCGgcggCCGCCUCgGCGCg -3'
miRNA:   3'- gCGCGUCGuaGa-------GCa---GGCGGAG-CGCG- -5'
23616 5' -59.5 NC_005261.1 + 3552 0.72 0.431192
Target:  5'- aGCGCGGCGggcgCGgcgCCGCUaaggCGCGCg -3'
miRNA:   3'- gCGCGUCGUaga-GCa--GGCGGa---GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 3739 0.67 0.671574
Target:  5'- aCGCGcCGGCggCgcaccgCG-CCGCCUCuaGCGCc -3'
miRNA:   3'- -GCGC-GUCGuaGa-----GCaGGCGGAG--CGCG- -5'
23616 5' -59.5 NC_005261.1 + 3788 0.77 0.215621
Target:  5'- aGCGCAGCG----GUCCGCCagcUCGCGCa -3'
miRNA:   3'- gCGCGUCGUagagCAGGCGG---AGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 3885 0.66 0.726535
Target:  5'- gCGCGCAGC-UCggcgagcgcggcgCGggCGCC-CGCGCc -3'
miRNA:   3'- -GCGCGUCGuAGa------------GCagGCGGaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 4314 0.76 0.226196
Target:  5'- cCGCGUAGCGcg-CGgCCGCCUCGCGg -3'
miRNA:   3'- -GCGCGUCGUagaGCaGGCGGAGCGCg -5'
23616 5' -59.5 NC_005261.1 + 4364 0.66 0.768081
Target:  5'- uCGCG-AGUGUCgcccgCG-CCGCCgaaGCGCa -3'
miRNA:   3'- -GCGCgUCGUAGa----GCaGGCGGag-CGCG- -5'
23616 5' -59.5 NC_005261.1 + 4478 0.66 0.730385
Target:  5'- uCGCGCGGCGcCgcggCGUa-GCCU-GCGCg -3'
miRNA:   3'- -GCGCGUCGUaGa---GCAggCGGAgCGCG- -5'
23616 5' -59.5 NC_005261.1 + 5124 0.66 0.768081
Target:  5'- gGCGCgGGCggCcCGcCgGCgCUCGCGCg -3'
miRNA:   3'- gCGCG-UCGuaGaGCaGgCG-GAGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 5511 0.68 0.641642
Target:  5'- cCGCgGCAGCGgcggCGaggCCGCCggcuucggCGCGCa -3'
miRNA:   3'- -GCG-CGUCGUaga-GCa--GGCGGa-------GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 9995 0.66 0.727498
Target:  5'- gGCGCGGCcacccgCUUG-CCacccgaccgggcggGCCUCGCGUc -3'
miRNA:   3'- gCGCGUCGua----GAGCaGG--------------CGGAGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 10506 0.68 0.63164
Target:  5'- gCGCGCGGCcgCcgcugCGggccCCGCggCGCGCu -3'
miRNA:   3'- -GCGCGUCGuaGa----GCa---GGCGgaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 11044 0.66 0.739952
Target:  5'- cCG-GCGGCA-CUCGggcgCCGCCcagGCGCc -3'
miRNA:   3'- -GCgCGUCGUaGAGCa---GGCGGag-CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.