miRNA display CGI


Results 1 - 20 of 355 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23616 5' -59.5 NC_005261.1 + 106341 0.66 0.768081
Target:  5'- cCGcCGCcGCGUC-CGcccCCGCCgcCGCGCu -3'
miRNA:   3'- -GC-GCGuCGUAGaGCa--GGCGGa-GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 80464 1.1 0.001145
Target:  5'- uCGCGCAGCAUCUCGUCCGCCUCGCGCc -3'
miRNA:   3'- -GCGCGUCGUAGAGCAGGCGGAGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 121811 0.66 0.768081
Target:  5'- gCGCGUGGCugggcUCUgCGggCCGCCgcggCgGCGCa -3'
miRNA:   3'- -GCGCGUCGu----AGA-GCa-GGCGGa---G-CGCG- -5'
23616 5' -59.5 NC_005261.1 + 4364 0.66 0.768081
Target:  5'- uCGCG-AGUGUCgcccgCG-CCGCCgaaGCGCa -3'
miRNA:   3'- -GCGCgUCGUAGa----GCaGGCGGag-CGCG- -5'
23616 5' -59.5 NC_005261.1 + 29975 0.66 0.768081
Target:  5'- gGCGCGGUg---CG-CCGCCggCGCGUc -3'
miRNA:   3'- gCGCGUCGuagaGCaGGCGGa-GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 59520 0.66 0.768081
Target:  5'- gCGCGCccuggAGCAgcccCG-CCGCCaccgCGCGCg -3'
miRNA:   3'- -GCGCG-----UCGUaga-GCaGGCGGa---GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 103527 0.66 0.768081
Target:  5'- -cCGCGGCAUC-CG-CCGCCUCcuCGg -3'
miRNA:   3'- gcGCGUCGUAGaGCaGGCGGAGc-GCg -5'
23616 5' -59.5 NC_005261.1 + 106201 0.66 0.768081
Target:  5'- gGCGCcguuuaaacaaaAGCGcCcgCGgCCGCCUgGCGCg -3'
miRNA:   3'- gCGCG------------UCGUaGa-GCaGGCGGAgCGCG- -5'
23616 5' -59.5 NC_005261.1 + 120330 0.66 0.768081
Target:  5'- gCGCGCuGCGUCcccgagcgCGUCUcCCU-GCGCu -3'
miRNA:   3'- -GCGCGuCGUAGa-------GCAGGcGGAgCGCG- -5'
23616 5' -59.5 NC_005261.1 + 29826 0.66 0.768081
Target:  5'- cCGCGCcGCG-CUCG-CCGagCUgCGCGCc -3'
miRNA:   3'- -GCGCGuCGUaGAGCaGGCg-GA-GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 100455 0.66 0.768081
Target:  5'- cCGC-CAGCuUgUCGcCCGCCgCGCGg -3'
miRNA:   3'- -GCGcGUCGuAgAGCaGGCGGaGCGCg -5'
23616 5' -59.5 NC_005261.1 + 111303 0.66 0.777237
Target:  5'- cCGcCGCuGCcUC-CG-CCGCCgccgCGCGCu -3'
miRNA:   3'- -GC-GCGuCGuAGaGCaGGCGGa---GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 18807 0.66 0.776327
Target:  5'- aGCgGCGGCGggcaugauugcgcUCUCGUgcUCGCgCUCGUGUc -3'
miRNA:   3'- gCG-CGUCGU-------------AGAGCA--GGCG-GAGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 14458 0.66 0.777237
Target:  5'- gCGCGCGGCGgagCUCGcgCUGguCCUCcaaCGCg -3'
miRNA:   3'- -GCGCGUCGUa--GAGCa-GGC--GGAGc--GCG- -5'
23616 5' -59.5 NC_005261.1 + 39165 0.66 0.777237
Target:  5'- cCGCGaCAacGCG-CUCGggcCCGaCUCGCGCc -3'
miRNA:   3'- -GCGC-GU--CGUaGAGCa--GGCgGAGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 39353 0.66 0.777237
Target:  5'- gCGCGCGGCGgca-G-CCGCCUCaucgGCGg -3'
miRNA:   3'- -GCGCGUCGUagagCaGGCGGAG----CGCg -5'
23616 5' -59.5 NC_005261.1 + 51008 0.66 0.777237
Target:  5'- gGCGCGGCGggagCUCGgcgagCGCCacccgGCGCu -3'
miRNA:   3'- gCGCGUCGUa---GAGCag---GCGGag---CGCG- -5'
23616 5' -59.5 NC_005261.1 + 85235 0.66 0.777237
Target:  5'- cCGCGcCGGCAUCUgGUUgCGCUgcaGCaGCg -3'
miRNA:   3'- -GCGC-GUCGUAGAgCAG-GCGGag-CG-CG- -5'
23616 5' -59.5 NC_005261.1 + 95709 0.66 0.777237
Target:  5'- gCGCGCgGGCucgcgCUCGggcCCGCC--GCGCu -3'
miRNA:   3'- -GCGCG-UCGua---GAGCa--GGCGGagCGCG- -5'
23616 5' -59.5 NC_005261.1 + 38490 0.66 0.777237
Target:  5'- cCGCgGCGGCGUCgacuggagCGUCguauaaggcgcgCGCUggcugCGCGCg -3'
miRNA:   3'- -GCG-CGUCGUAGa-------GCAG------------GCGGa----GCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.