Results 1 - 20 of 355 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23616 | 5' | -59.5 | NC_005261.1 | + | 50825 | 0.66 | 0.777237 |
Target: 5'- cCGCGCGGCuuggCG-CCGCgagCUgGCGCc -3' miRNA: 3'- -GCGCGUCGuagaGCaGGCG---GAgCGCG- -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 121811 | 0.66 | 0.768081 |
Target: 5'- gCGCGUGGCugggcUCUgCGggCCGCCgcggCgGCGCa -3' miRNA: 3'- -GCGCGUCGu----AGA-GCa-GGCGGa---G-CGCG- -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 4364 | 0.66 | 0.768081 |
Target: 5'- uCGCG-AGUGUCgcccgCG-CCGCCgaaGCGCa -3' miRNA: 3'- -GCGCgUCGUAGa----GCaGGCGGag-CGCG- -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 29975 | 0.66 | 0.768081 |
Target: 5'- gGCGCGGUg---CG-CCGCCggCGCGUc -3' miRNA: 3'- gCGCGUCGuagaGCaGGCGGa-GCGCG- -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 59520 | 0.66 | 0.768081 |
Target: 5'- gCGCGCccuggAGCAgcccCG-CCGCCaccgCGCGCg -3' miRNA: 3'- -GCGCG-----UCGUaga-GCaGGCGGa---GCGCG- -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 103527 | 0.66 | 0.768081 |
Target: 5'- -cCGCGGCAUC-CG-CCGCCUCcuCGg -3' miRNA: 3'- gcGCGUCGUAGaGCaGGCGGAGc-GCg -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 106201 | 0.66 | 0.768081 |
Target: 5'- gGCGCcguuuaaacaaaAGCGcCcgCGgCCGCCUgGCGCg -3' miRNA: 3'- gCGCG------------UCGUaGa-GCaGGCGGAgCGCG- -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 120330 | 0.66 | 0.768081 |
Target: 5'- gCGCGCuGCGUCcccgagcgCGUCUcCCU-GCGCu -3' miRNA: 3'- -GCGCGuCGUAGa-------GCAGGcGGAgCGCG- -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 29826 | 0.66 | 0.768081 |
Target: 5'- cCGCGCcGCG-CUCG-CCGagCUgCGCGCc -3' miRNA: 3'- -GCGCGuCGUaGAGCaGGCg-GA-GCGCG- -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 100455 | 0.66 | 0.768081 |
Target: 5'- cCGC-CAGCuUgUCGcCCGCCgCGCGg -3' miRNA: 3'- -GCGcGUCGuAgAGCaGGCGGaGCGCg -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 106341 | 0.66 | 0.768081 |
Target: 5'- cCGcCGCcGCGUC-CGcccCCGCCgcCGCGCu -3' miRNA: 3'- -GC-GCGuCGUAGaGCa--GGCGGa-GCGCG- -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 18807 | 0.66 | 0.776327 |
Target: 5'- aGCgGCGGCGggcaugauugcgcUCUCGUgcUCGCgCUCGUGUc -3' miRNA: 3'- gCG-CGUCGU-------------AGAGCA--GGCG-GAGCGCG- -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 14458 | 0.66 | 0.777237 |
Target: 5'- gCGCGCGGCGgagCUCGcgCUGguCCUCcaaCGCg -3' miRNA: 3'- -GCGCGUCGUa--GAGCa-GGC--GGAGc--GCG- -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 39165 | 0.66 | 0.777237 |
Target: 5'- cCGCGaCAacGCG-CUCGggcCCGaCUCGCGCc -3' miRNA: 3'- -GCGC-GU--CGUaGAGCa--GGCgGAGCGCG- -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 39353 | 0.66 | 0.777237 |
Target: 5'- gCGCGCGGCGgca-G-CCGCCUCaucgGCGg -3' miRNA: 3'- -GCGCGUCGUagagCaGGCGGAG----CGCg -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 51008 | 0.66 | 0.777237 |
Target: 5'- gGCGCGGCGggagCUCGgcgagCGCCacccgGCGCu -3' miRNA: 3'- gCGCGUCGUa---GAGCag---GCGGag---CGCG- -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 85235 | 0.66 | 0.777237 |
Target: 5'- cCGCGcCGGCAUCUgGUUgCGCUgcaGCaGCg -3' miRNA: 3'- -GCGC-GUCGUAGAgCAG-GCGGag-CG-CG- -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 95709 | 0.66 | 0.777237 |
Target: 5'- gCGCGCgGGCucgcgCUCGggcCCGCC--GCGCu -3' miRNA: 3'- -GCGCG-UCGua---GAGCa--GGCGGagCGCG- -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 38490 | 0.66 | 0.777237 |
Target: 5'- cCGCgGCGGCGUCgacuggagCGUCguauaaggcgcgCGCUggcugCGCGCg -3' miRNA: 3'- -GCG-CGUCGUAGa-------GCAG------------GCGGa----GCGCG- -5' |
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23616 | 5' | -59.5 | NC_005261.1 | + | 111303 | 0.66 | 0.777237 |
Target: 5'- cCGcCGCuGCcUC-CG-CCGCCgccgCGCGCu -3' miRNA: 3'- -GC-GCGuCGuAGaGCaGGCGGa---GCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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