miRNA display CGI


Results 1 - 20 of 355 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23616 5' -59.5 NC_005261.1 + 80464 1.1 0.001145
Target:  5'- uCGCGCAGCAUCUCGUCCGCCUCGCGCc -3'
miRNA:   3'- -GCGCGUCGUAGAGCAGGCGGAGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 100526 0.9 0.030284
Target:  5'- cCGCGCGGCGccagcgcgucgaUCUCcgaGUCCGCCUCGCGCa -3'
miRNA:   3'- -GCGCGUCGU------------AGAG---CAGGCGGAGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 119139 0.86 0.055855
Target:  5'- gGCGCGGcCAUCUCGgaUCCGCC-CGCGCg -3'
miRNA:   3'- gCGCGUC-GUAGAGC--AGGCGGaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 62061 0.82 0.099261
Target:  5'- gGCGCAGCAgCUgccCCGCCUCGCGCg -3'
miRNA:   3'- gCGCGUCGUaGAgcaGGCGGAGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 19843 0.81 0.110016
Target:  5'- gCGCGCGGCGUcCUCGgCUuCCUCGCGCg -3'
miRNA:   3'- -GCGCGUCGUA-GAGCaGGcGGAGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 105191 0.8 0.128209
Target:  5'- cCGcCGCGGCAggCUCGUCCGCUUucccgcCGCGCg -3'
miRNA:   3'- -GC-GCGUCGUa-GAGCAGGCGGA------GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 66542 0.8 0.1315
Target:  5'- aCGCGCAGCAgCUgGUCgGCCgugcCGCGCu -3'
miRNA:   3'- -GCGCGUCGUaGAgCAGgCGGa---GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 42242 0.79 0.164796
Target:  5'- gCGCGCAGCGcCUCGaaCUGCC-CGCGCg -3'
miRNA:   3'- -GCGCGUCGUaGAGCa-GGCGGaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 124315 0.78 0.1819
Target:  5'- aCGCGCAGCAgcgCGUCCGCCaaaaagagcaGCGCc -3'
miRNA:   3'- -GCGCGUCGUagaGCAGGCGGag--------CGCG- -5'
23616 5' -59.5 NC_005261.1 + 100882 0.78 0.191028
Target:  5'- gCGCGCAGCccCUCGUacgCgGCCUCGcCGCg -3'
miRNA:   3'- -GCGCGUCGuaGAGCA---GgCGGAGC-GCG- -5'
23616 5' -59.5 NC_005261.1 + 71505 0.77 0.204977
Target:  5'- gCGCGCgaaagucGGCGggCUCGUCCGCguacgacgccacCUCGCGCa -3'
miRNA:   3'- -GCGCG-------UCGUa-GAGCAGGCG------------GAGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 3788 0.77 0.215621
Target:  5'- aGCGCAGCG----GUCCGCCagcUCGCGCa -3'
miRNA:   3'- gCGCGUCGUagagCAGGCGG---AGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 4314 0.76 0.226196
Target:  5'- cCGCGUAGCGcg-CGgCCGCCUCGCGg -3'
miRNA:   3'- -GCGCGUCGUagaGCaGGCGGAGCGCg -5'
23616 5' -59.5 NC_005261.1 + 19278 0.76 0.231647
Target:  5'- aCGC-CAGCGUCUCGUacgcgacgaCGCC-CGCGCu -3'
miRNA:   3'- -GCGcGUCGUAGAGCAg--------GCGGaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 22597 0.76 0.237207
Target:  5'- gGCGCAcgcugccggcGCAUCUCGUCC-CgUCGCGUc -3'
miRNA:   3'- gCGCGU----------CGUAGAGCAGGcGgAGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 48814 0.76 0.242307
Target:  5'- uGCGCGGCGUCcgcgacgccgucgUCGgccCCGCCgcCGCGCa -3'
miRNA:   3'- gCGCGUCGUAG-------------AGCa--GGCGGa-GCGCG- -5'
23616 5' -59.5 NC_005261.1 + 116353 0.76 0.248663
Target:  5'- cCGUGCGGguUCgucCGUgCCGCCgCGCGCa -3'
miRNA:   3'- -GCGCGUCguAGa--GCA-GGCGGaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 101830 0.76 0.254561
Target:  5'- gCGCGCGGCugaUC-UCCGCCgCGCGCc -3'
miRNA:   3'- -GCGCGUCGuagAGcAGGCGGaGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 82978 0.76 0.254561
Target:  5'- gCGCGUcgAGCA-CggaggCGgCCGCCUCGCGCa -3'
miRNA:   3'- -GCGCG--UCGUaGa----GCaGGCGGAGCGCG- -5'
23616 5' -59.5 NC_005261.1 + 18594 0.75 0.266701
Target:  5'- gGCGCAGCcgUgcgaggUGUCCGUCgCGCGCg -3'
miRNA:   3'- gCGCGUCGuaGa-----GCAGGCGGaGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.