miRNA display CGI


Results 21 - 40 of 384 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23621 5' -61 NC_005261.1 + 120662 0.66 0.693262
Target:  5'- gGCGCgGGCGCGccugugAUCUCGcGcGCGCCc -3'
miRNA:   3'- -CGCGgUUGCGCca----UGGAGC-C-CGCGGu -5'
23621 5' -61 NC_005261.1 + 109032 0.66 0.693262
Target:  5'- cCGCCGugGCGCGcaGCCgcgCGGcCGCCAg -3'
miRNA:   3'- cGCGGU--UGCGCcaUGGa--GCCcGCGGU- -5'
23621 5' -61 NC_005261.1 + 110252 0.66 0.691306
Target:  5'- gGCGCCcggggGGCuGCGGgccucccucgugGCCUuuuccuuccuggCGGGCGCCu -3'
miRNA:   3'- -CGCGG-----UUG-CGCCa-----------UGGA------------GCCCGCGGu -5'
23621 5' -61 NC_005261.1 + 37430 0.66 0.691306
Target:  5'- aCGCCGuggcGCGCGGgcucGCCgaagauauaaggCGGGUGCUc -3'
miRNA:   3'- cGCGGU----UGCGCCa---UGGa-----------GCCCGCGGu -5'
23621 5' -61 NC_005261.1 + 38311 0.66 0.690327
Target:  5'- aGCGCgCAGgGCGGcccgaugguguucaUGCuCUgGGGCGCgCAc -3'
miRNA:   3'- -CGCG-GUUgCGCC--------------AUG-GAgCCCGCG-GU- -5'
23621 5' -61 NC_005261.1 + 88755 0.66 0.689348
Target:  5'- aCGCCAugGUGGcggcgcugcgcuCCUCGGcccuggccgccgGCGCCGc -3'
miRNA:   3'- cGCGGUugCGCCau----------GGAGCC------------CGCGGU- -5'
23621 5' -61 NC_005261.1 + 53707 0.66 0.683464
Target:  5'- gGCGCCGcgcgcCGCGGccaGCUgCGGcGCGCCc -3'
miRNA:   3'- -CGCGGUu----GCGCCa--UGGaGCC-CGCGGu -5'
23621 5' -61 NC_005261.1 + 70340 0.66 0.683464
Target:  5'- cGCGUCGA-GCGGgccggggACCgggaggCGGcGCGCCu -3'
miRNA:   3'- -CGCGGUUgCGCCa------UGGa-----GCC-CGCGGu -5'
23621 5' -61 NC_005261.1 + 108600 0.66 0.683464
Target:  5'- uCGCCcACG-GGcaccagcGCCUCGGGCGgCAc -3'
miRNA:   3'- cGCGGuUGCgCCa------UGGAGCCCGCgGU- -5'
23621 5' -61 NC_005261.1 + 106038 0.66 0.683464
Target:  5'- aCGCCAcCGCGcUGCC-CGGcccuaGCGCCGc -3'
miRNA:   3'- cGCGGUuGCGCcAUGGaGCC-----CGCGGU- -5'
23621 5' -61 NC_005261.1 + 131809 0.66 0.683464
Target:  5'- cGCGCCugacGGCGCGccGCCgcuugaCGcGGCGCCc -3'
miRNA:   3'- -CGCGG----UUGCGCcaUGGa-----GC-CCGCGGu -5'
23621 5' -61 NC_005261.1 + 133375 0.66 0.683464
Target:  5'- gGCuGCCuGCGCGcGgcCCaCGGGCGCgCGg -3'
miRNA:   3'- -CG-CGGuUGCGC-CauGGaGCCCGCG-GU- -5'
23621 5' -61 NC_005261.1 + 49935 0.66 0.682482
Target:  5'- gGCGCC--CGCGGaGCCgCGcaaaaaaggaggcGGCGCCGu -3'
miRNA:   3'- -CGCGGuuGCGCCaUGGaGC-------------CCGCGGU- -5'
23621 5' -61 NC_005261.1 + 16254 0.66 0.682482
Target:  5'- cGCGCCGGggcCGcCGGggccggGCUUCggcucgcccggggGGGCGCCGu -3'
miRNA:   3'- -CGCGGUU---GC-GCCa-----UGGAG-------------CCCGCGGU- -5'
23621 5' -61 NC_005261.1 + 61954 0.66 0.673625
Target:  5'- cGCGCCGAcCGCGuccCCcagcCGGGuCGCCGa -3'
miRNA:   3'- -CGCGGUU-GCGCcauGGa---GCCC-GCGGU- -5'
23621 5' -61 NC_005261.1 + 76073 0.66 0.673625
Target:  5'- --aCCAGgGCGGgcugcugcGCCUCGuGGCGCUg -3'
miRNA:   3'- cgcGGUUgCGCCa-------UGGAGC-CCGCGGu -5'
23621 5' -61 NC_005261.1 + 130655 0.66 0.673625
Target:  5'- uCGCCGACGCGcugcuCCUCGGcGaGCCc -3'
miRNA:   3'- cGCGGUUGCGCcau--GGAGCC-CgCGGu -5'
23621 5' -61 NC_005261.1 + 2670 0.66 0.673625
Target:  5'- cCGCC-GCGCuGGggACCcggCGGcGCGCCGg -3'
miRNA:   3'- cGCGGuUGCG-CCa-UGGa--GCC-CGCGGU- -5'
23621 5' -61 NC_005261.1 + 87964 0.66 0.673625
Target:  5'- cCGCCGGCgGCGGg--CUCGGuauuuaaccucGCGCCGg -3'
miRNA:   3'- cGCGGUUG-CGCCaugGAGCC-----------CGCGGU- -5'
23621 5' -61 NC_005261.1 + 59788 0.66 0.673625
Target:  5'- aGCGaCGGCgGCGGgcggcagGCCggCGuGGCGCCGc -3'
miRNA:   3'- -CGCgGUUG-CGCCa------UGGa-GC-CCGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.