miRNA display CGI


Results 21 - 40 of 384 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23621 5' -61 NC_005261.1 + 101520 0.75 0.213936
Target:  5'- gGCGCCcucguCGCGGUcgcgcgccGCCUCGGcCGCCAc -3'
miRNA:   3'- -CGCGGuu---GCGCCA--------UGGAGCCcGCGGU- -5'
23621 5' -61 NC_005261.1 + 97007 0.75 0.213936
Target:  5'- cGCGCCAuuGgGCGG-GCCgUCGGGCGCg- -3'
miRNA:   3'- -CGCGGU--UgCGCCaUGG-AGCCCGCGgu -5'
23621 5' -61 NC_005261.1 + 93920 0.75 0.224353
Target:  5'- gGCGCC--CGCGGgcuugcGCCguccgCGGGCGCCGc -3'
miRNA:   3'- -CGCGGuuGCGCCa-----UGGa----GCCCGCGGU- -5'
23621 5' -61 NC_005261.1 + 97423 0.75 0.229179
Target:  5'- cGCGCCGggccugcccuuggGCGCGGgucuggGCUUCGGcgGCGCCGg -3'
miRNA:   3'- -CGCGGU-------------UGCGCCa-----UGGAGCC--CGCGGU- -5'
23621 5' -61 NC_005261.1 + 31889 0.75 0.229721
Target:  5'- cGCGCCGaggccgcuuacGCGCGGcucUACCcCGGGgCGCCGc -3'
miRNA:   3'- -CGCGGU-----------UGCGCC---AUGGaGCCC-GCGGU- -5'
23621 5' -61 NC_005261.1 + 93222 0.75 0.230264
Target:  5'- aGCGCCAGCGCGGcaaaaaagcgGCCgccgucgccuucgacCGGcGCGCCAg -3'
miRNA:   3'- -CGCGGUUGCGCCa---------UGGa--------------GCC-CGCGGU- -5'
23621 5' -61 NC_005261.1 + 3822 0.75 0.235197
Target:  5'- cGCGCUGcCGCGG-GCC-CGGGCGCUg -3'
miRNA:   3'- -CGCGGUuGCGCCaUGGaGCCCGCGGu -5'
23621 5' -61 NC_005261.1 + 68275 0.75 0.235197
Target:  5'- uGCGCCcGCGCGGcggggccccgGCCgCGGGCGCgGa -3'
miRNA:   3'- -CGCGGuUGCGCCa---------UGGaGCCCGCGgU- -5'
23621 5' -61 NC_005261.1 + 102422 0.75 0.235197
Target:  5'- cUGCCGcuGCGCGGccgccuCCUCGGcGCGCCGc -3'
miRNA:   3'- cGCGGU--UGCGCCau----GGAGCC-CGCGGU- -5'
23621 5' -61 NC_005261.1 + 126460 0.74 0.246478
Target:  5'- cGCGCCAGCGCGcucGCCUCGcGGUaguaccgcgccGCCAc -3'
miRNA:   3'- -CGCGGUUGCGCca-UGGAGC-CCG-----------CGGU- -5'
23621 5' -61 NC_005261.1 + 15278 0.74 0.251699
Target:  5'- gGCGCCGccggggcGCGCGGUcgcgGCCUCcGGGuCGUCGg -3'
miRNA:   3'- -CGCGGU-------UGCGCCA----UGGAG-CCC-GCGGU- -5'
23621 5' -61 NC_005261.1 + 40256 0.74 0.252284
Target:  5'- aGCGCCAugGCGGcgGCCgcggCGGG-GCuCAg -3'
miRNA:   3'- -CGCGGUugCGCCa-UGGa---GCCCgCG-GU- -5'
23621 5' -61 NC_005261.1 + 90243 0.74 0.252284
Target:  5'- cGCGCCGuCG-GGUAUCa-GGGCGCCAa -3'
miRNA:   3'- -CGCGGUuGCgCCAUGGagCCCGCGGU- -5'
23621 5' -61 NC_005261.1 + 97088 0.74 0.252284
Target:  5'- gGCGCCGGC-UGG-GCCggGGGCGCCAg -3'
miRNA:   3'- -CGCGGUUGcGCCaUGGagCCCGCGGU- -5'
23621 5' -61 NC_005261.1 + 35912 0.74 0.258203
Target:  5'- cGCGgCAGCGCGGccccgcGCCgcagcccagCGGGCGCCc -3'
miRNA:   3'- -CGCgGUUGCGCCa-----UGGa--------GCCCGCGGu -5'
23621 5' -61 NC_005261.1 + 76017 0.74 0.264235
Target:  5'- gGCGCC-GCGCaGcGCCgCGGGCGCCc -3'
miRNA:   3'- -CGCGGuUGCGcCaUGGaGCCCGCGGu -5'
23621 5' -61 NC_005261.1 + 94387 0.74 0.27038
Target:  5'- -gGCCAGCGCGGcggcgGCCUCcucgacgaaGGGCGCg- -3'
miRNA:   3'- cgCGGUUGCGCCa----UGGAG---------CCCGCGgu -5'
23621 5' -61 NC_005261.1 + 72475 0.74 0.272871
Target:  5'- aGCGCgAGCGCGGccagcgccaggagcGCCgcgcgaagCGGGCGCCGc -3'
miRNA:   3'- -CGCGgUUGCGCCa-------------UGGa-------GCCCGCGGU- -5'
23621 5' -61 NC_005261.1 + 32419 0.74 0.27664
Target:  5'- cCGCCGGCGaCGGgagccccgccgGCCU-GGGCGCCGg -3'
miRNA:   3'- cGCGGUUGC-GCCa----------UGGAgCCCGCGGU- -5'
23621 5' -61 NC_005261.1 + 59851 0.73 0.283016
Target:  5'- gGCgGCCAuGCGCGGgacgucgGCCUCguacGGGUGCCGg -3'
miRNA:   3'- -CG-CGGU-UGCGCCa------UGGAG----CCCGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.