miRNA display CGI


Results 1 - 20 of 384 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23621 5' -61 NC_005261.1 + 78339 1.09 0.000881
Target:  5'- cGCGCCAACGCGGUACCUCGGGCGCCAc -3'
miRNA:   3'- -CGCGGUUGCGCCAUGGAGCCCGCGGU- -5'
23621 5' -61 NC_005261.1 + 80098 0.82 0.07859
Target:  5'- cGCGCgCGcCGCGGUACCggcUUGGGCGCCGc -3'
miRNA:   3'- -CGCG-GUuGCGCCAUGG---AGCCCGCGGU- -5'
23621 5' -61 NC_005261.1 + 32277 0.81 0.084923
Target:  5'- gGCGCCGcCGCuGGUGCUggaggCGGGCGCCGc -3'
miRNA:   3'- -CGCGGUuGCG-CCAUGGa----GCCCGCGGU- -5'
23621 5' -61 NC_005261.1 + 93684 0.81 0.089413
Target:  5'- gGCGCCGGCGgGGcGCCggCGGGUGCCu -3'
miRNA:   3'- -CGCGGUUGCgCCaUGGa-GCCCGCGGu -5'
23621 5' -61 NC_005261.1 + 68975 0.81 0.096572
Target:  5'- cGCGCCAcCGCGGcccuuuucggGCCgcgCGGGCGCCGc -3'
miRNA:   3'- -CGCGGUuGCGCCa---------UGGa--GCCCGCGGU- -5'
23621 5' -61 NC_005261.1 + 4518 0.79 0.118396
Target:  5'- cGCGCCcGCGCGGgcGCCgcggcgaGGGCGCCGg -3'
miRNA:   3'- -CGCGGuUGCGCCa-UGGag-----CCCGCGGU- -5'
23621 5' -61 NC_005261.1 + 93462 0.79 0.118396
Target:  5'- gGCcCCAGCGCGGUGCCg-GGGCGCg- -3'
miRNA:   3'- -CGcGGUUGCGCCAUGGagCCCGCGgu -5'
23621 5' -61 NC_005261.1 + 76045 0.78 0.141179
Target:  5'- cGCGCCAucaGCGUGG--CCggCGGGCGCCAc -3'
miRNA:   3'- -CGCGGU---UGCGCCauGGa-GCCCGCGGU- -5'
23621 5' -61 NC_005261.1 + 105303 0.78 0.152123
Target:  5'- cGCGCgAGCGCGGgguCCUCGcacuccgccccGGCGCCGc -3'
miRNA:   3'- -CGCGgUUGCGCCau-GGAGC-----------CCGCGGU- -5'
23621 5' -61 NC_005261.1 + 44290 0.77 0.163832
Target:  5'- cCGCCAGCgGCGGgccaggGCCgcugcccgCGGGCGCCGc -3'
miRNA:   3'- cGCGGUUG-CGCCa-----UGGa-------GCCCGCGGU- -5'
23621 5' -61 NC_005261.1 + 12564 0.77 0.167912
Target:  5'- cGCGCCGggcaACGCGGgGCCgagagGGGCGCCu -3'
miRNA:   3'- -CGCGGU----UGCGCCaUGGag---CCCGCGGu -5'
23621 5' -61 NC_005261.1 + 84366 0.77 0.172082
Target:  5'- gGCGCCGccCGCGGgcucgGCCUCGGcCGCCGc -3'
miRNA:   3'- -CGCGGUu-GCGCCa----UGGAGCCcGCGGU- -5'
23621 5' -61 NC_005261.1 + 104993 0.77 0.176345
Target:  5'- gGCGcCCAGCGCGGgcgGCggUCGGGgCGCCAg -3'
miRNA:   3'- -CGC-GGUUGCGCCa--UGg-AGCCC-GCGGU- -5'
23621 5' -61 NC_005261.1 + 102938 0.77 0.180702
Target:  5'- aGCGCCGccgccgcuGCgGCGGcgGCCgCGGGCGCCGc -3'
miRNA:   3'- -CGCGGU--------UG-CGCCa-UGGaGCCCGCGGU- -5'
23621 5' -61 NC_005261.1 + 133282 0.77 0.180702
Target:  5'- gGCGCCGGCGCcc-GCCUCGuGGcCGCCAa -3'
miRNA:   3'- -CGCGGUUGCGccaUGGAGC-CC-GCGGU- -5'
23621 5' -61 NC_005261.1 + 33605 0.76 0.185153
Target:  5'- gGCGCCGGCGCGGgcggcgggGCC-CGGGgGCg- -3'
miRNA:   3'- -CGCGGUUGCGCCa-------UGGaGCCCgCGgu -5'
23621 5' -61 NC_005261.1 + 95808 0.76 0.194347
Target:  5'- gGCGCCGGCgggggcucGCGGU-CCUCGcGGCGCUu -3'
miRNA:   3'- -CGCGGUUG--------CGCCAuGGAGC-CCGCGGu -5'
23621 5' -61 NC_005261.1 + 135749 0.76 0.203938
Target:  5'- cGCGCCucagccGCGCGGUGCgCUCcGGCGCa- -3'
miRNA:   3'- -CGCGGu-----UGCGCCAUG-GAGcCCGCGgu -5'
23621 5' -61 NC_005261.1 + 31303 0.76 0.208886
Target:  5'- cCGCCGccGCGCGGgGCCcgCGGGCGCg- -3'
miRNA:   3'- cGCGGU--UGCGCCaUGGa-GCCCGCGgu -5'
23621 5' -61 NC_005261.1 + 97157 0.76 0.208886
Target:  5'- gGCGCCGGCcCGGccgGCUgggucgCGGGCGCCGg -3'
miRNA:   3'- -CGCGGUUGcGCCa--UGGa-----GCCCGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.