miRNA display CGI


Results 1 - 20 of 384 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23621 5' -61 NC_005261.1 + 120 0.7 0.442657
Target:  5'- cGCGCCGGCGCcgccccuGGUGCUcgCGGG-GCUg -3'
miRNA:   3'- -CGCGGUUGCG-------CCAUGGa-GCCCgCGGu -5'
23621 5' -61 NC_005261.1 + 1169 0.69 0.48776
Target:  5'- cGCGCCGGCccgcgccGCGGccgggGCCggggcCGGGCGCg- -3'
miRNA:   3'- -CGCGGUUG-------CGCCa----UGGa----GCCCGCGgu -5'
23621 5' -61 NC_005261.1 + 1308 0.67 0.634032
Target:  5'- uCGCCGGCgGCGGcacGCgCUcCGGGaCGCCGc -3'
miRNA:   3'- cGCGGUUG-CGCCa--UG-GA-GCCC-GCGGU- -5'
23621 5' -61 NC_005261.1 + 1442 0.7 0.461322
Target:  5'- aGCaCCAGCgGCGGcGCCUCGGcGUGCg- -3'
miRNA:   3'- -CGcGGUUG-CGCCaUGGAGCC-CGCGgu -5'
23621 5' -61 NC_005261.1 + 1495 0.7 0.461322
Target:  5'- -gGCCAccgcCGCGGccggcaGCUcgUCGGGCGCCAg -3'
miRNA:   3'- cgCGGUu---GCGCCa-----UGG--AGCCCGCGGU- -5'
23621 5' -61 NC_005261.1 + 1895 0.68 0.545511
Target:  5'- cGCGCCAGCGCGcGccgcucagGCCagcgCGcGGCGCa- -3'
miRNA:   3'- -CGCGGUUGCGC-Ca-------UGGa---GC-CCGCGgu -5'
23621 5' -61 NC_005261.1 + 2262 0.69 0.526297
Target:  5'- cCGCCGGCGCucGU-CCUCGccgggcGGCGCCGc -3'
miRNA:   3'- cGCGGUUGCGc-CAuGGAGC------CCGCGGU- -5'
23621 5' -61 NC_005261.1 + 2449 0.69 0.479477
Target:  5'- aGCGCCu-CGgGGUcgaaggcgaGCgC-CGGGCGCCAg -3'
miRNA:   3'- -CGCGGuuGCgCCA---------UG-GaGCCCGCGGU- -5'
23621 5' -61 NC_005261.1 + 2563 0.69 0.488685
Target:  5'- gGCGCgGGCGUguGGUACUcccCGGGCGgCAc -3'
miRNA:   3'- -CGCGgUUGCG--CCAUGGa--GCCCGCgGU- -5'
23621 5' -61 NC_005261.1 + 2608 0.68 0.584555
Target:  5'- cCGUCGGCgGCGGgGCCgcCGGGCGgCAu -3'
miRNA:   3'- cGCGGUUG-CGCCaUGGa-GCCCGCgGU- -5'
23621 5' -61 NC_005261.1 + 2670 0.66 0.673625
Target:  5'- cCGCC-GCGCuGGggACCcggCGGcGCGCCGg -3'
miRNA:   3'- cGCGGuUGCG-CCa-UGGa--GCC-CGCGGU- -5'
23621 5' -61 NC_005261.1 + 2754 0.69 0.479477
Target:  5'- cGgGCCGuCGCGGcggGCCUCGaGGC-CCGc -3'
miRNA:   3'- -CgCGGUuGCGCCa--UGGAGC-CCGcGGU- -5'
23621 5' -61 NC_005261.1 + 3342 0.7 0.461322
Target:  5'- cGCGCC---GCGGcGCC-CGGcGCGCCGg -3'
miRNA:   3'- -CGCGGuugCGCCaUGGaGCC-CGCGGU- -5'
23621 5' -61 NC_005261.1 + 3464 0.69 0.497975
Target:  5'- cGCGCC-GCGCGucgaGUACCgcgccagCGGG-GCCAc -3'
miRNA:   3'- -CGCGGuUGCGC----CAUGGa------GCCCgCGGU- -5'
23621 5' -61 NC_005261.1 + 3508 0.72 0.323712
Target:  5'- cCGCCAGCGCGGccGCCUCcagcgcGGCgGCCGc -3'
miRNA:   3'- cGCGGUUGCGCCa-UGGAGc-----CCG-CGGU- -5'
23621 5' -61 NC_005261.1 + 3545 0.71 0.409163
Target:  5'- gGCGCgCAGCGCGGcggg-CGcGGCGCCGc -3'
miRNA:   3'- -CGCG-GUUGCGCCauggaGC-CCGCGGU- -5'
23621 5' -61 NC_005261.1 + 3822 0.75 0.235197
Target:  5'- cGCGCUGcCGCGG-GCC-CGGGCGCUg -3'
miRNA:   3'- -CGCGGUuGCGCCaUGGaGCCCGCGGu -5'
23621 5' -61 NC_005261.1 + 3896 0.67 0.634032
Target:  5'- -gGCgAGCGCGGcg---CGGGCGCCc -3'
miRNA:   3'- cgCGgUUGCGCCauggaGCCCGCGGu -5'
23621 5' -61 NC_005261.1 + 3921 0.7 0.452382
Target:  5'- cCGCCGGCGCcg-GCCUcCGGGUagGCCAu -3'
miRNA:   3'- cGCGGUUGCGccaUGGA-GCCCG--CGGU- -5'
23621 5' -61 NC_005261.1 + 4442 0.67 0.594412
Target:  5'- gGCGUCAGCaGCGGgcCCUCcagcGGCGgCGg -3'
miRNA:   3'- -CGCGGUUG-CGCCauGGAGc---CCGCgGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.