miRNA display CGI


Results 1 - 20 of 384 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23621 5' -61 NC_005261.1 + 137803 0.7 0.442657
Target:  5'- cGCGCCGGCGCcgccccuGGUGCUcgCGGG-GCUg -3'
miRNA:   3'- -CGCGGUUGCG-------CCAUGGa-GCCCgCGGu -5'
23621 5' -61 NC_005261.1 + 135749 0.76 0.203938
Target:  5'- cGCGCCucagccGCGCGGUGCgCUCcGGCGCa- -3'
miRNA:   3'- -CGCGGu-----UGCGCCAUG-GAGcCCGCGgu -5'
23621 5' -61 NC_005261.1 + 135654 0.67 0.590466
Target:  5'- uGCGCgGGCGCGGgcggcCCUCGcucgaggagcucuGCGCCGc -3'
miRNA:   3'- -CGCGgUUGCGCCau---GGAGCc------------CGCGGU- -5'
23621 5' -61 NC_005261.1 + 135304 0.67 0.624111
Target:  5'- cGCGaCCGGCGUGucGCCcUGGGCgGCCGu -3'
miRNA:   3'- -CGC-GGUUGCGCcaUGGaGCCCG-CGGU- -5'
23621 5' -61 NC_005261.1 + 134963 0.66 0.699119
Target:  5'- gGCGCCGGCGacgcagacggcgaGGacgggGCCgccgGGGCGCCc -3'
miRNA:   3'- -CGCGGUUGCg------------CCa----UGGag--CCCGCGGu -5'
23621 5' -61 NC_005261.1 + 134357 0.67 0.614197
Target:  5'- cGCGCCGccGCGCGGgggg-CGG-CGCCGc -3'
miRNA:   3'- -CGCGGU--UGCGCCauggaGCCcGCGGU- -5'
23621 5' -61 NC_005261.1 + 134250 0.66 0.649899
Target:  5'- cGCGCCcuGCGCGGccgcguacccgaugUACCUgaagaucUGGGCGUgGg -3'
miRNA:   3'- -CGCGGu-UGCGCC--------------AUGGA-------GCCCGCGgU- -5'
23621 5' -61 NC_005261.1 + 133645 0.72 0.323712
Target:  5'- cGCGCCGcuGCGCGagcgcugcGUgcucGCCUCcGGCGCCAa -3'
miRNA:   3'- -CGCGGU--UGCGC--------CA----UGGAGcCCGCGGU- -5'
23621 5' -61 NC_005261.1 + 133375 0.66 0.683464
Target:  5'- gGCuGCCuGCGCGcGgcCCaCGGGCGCgCGg -3'
miRNA:   3'- -CG-CGGuUGCGC-CauGGaGCCCGCG-GU- -5'
23621 5' -61 NC_005261.1 + 133282 0.77 0.180702
Target:  5'- gGCGCCGGCGCcc-GCCUCGuGGcCGCCAa -3'
miRNA:   3'- -CGCGGUUGCGccaUGGAGC-CC-GCGGU- -5'
23621 5' -61 NC_005261.1 + 132958 0.7 0.43479
Target:  5'- uGCGCCGACGUGGccGCCUUcGuCGCCGc -3'
miRNA:   3'- -CGCGGUUGCGCCa-UGGAGcCcGCGGU- -5'
23621 5' -61 NC_005261.1 + 132617 0.67 0.614197
Target:  5'- cCGCCAggggGCGCuGGcGCCgaggacgCGGGCGCg- -3'
miRNA:   3'- cGCGGU----UGCG-CCaUGGa------GCCCGCGgu -5'
23621 5' -61 NC_005261.1 + 132315 0.66 0.653862
Target:  5'- gGCGCCccauccccCGCGGggACCUgcaCGGG-GCCAu -3'
miRNA:   3'- -CGCGGuu------GCGCCa-UGGA---GCCCgCGGU- -5'
23621 5' -61 NC_005261.1 + 132161 0.66 0.663755
Target:  5'- cGCGCCGccgcugcaggcaGCGCGGg----CGGGgGCCc -3'
miRNA:   3'- -CGCGGU------------UGCGCCauggaGCCCgCGGu -5'
23621 5' -61 NC_005261.1 + 131809 0.66 0.683464
Target:  5'- cGCGCCugacGGCGCGccGCCgcuugaCGcGGCGCCc -3'
miRNA:   3'- -CGCGG----UUGCGCcaUGGa-----GC-CCGCGGu -5'
23621 5' -61 NC_005261.1 + 131759 0.67 0.643951
Target:  5'- aCGCCGGC-CGGcGCggCGGGCGCg- -3'
miRNA:   3'- cGCGGUUGcGCCaUGgaGCCCGCGgu -5'
23621 5' -61 NC_005261.1 + 131433 0.71 0.382087
Target:  5'- gGCGCCGGCGCcccccuugcgccgcGCCUcgCGGGCGCCu -3'
miRNA:   3'- -CGCGGUUGCGcca-----------UGGA--GCCCGCGGu -5'
23621 5' -61 NC_005261.1 + 131191 0.71 0.409163
Target:  5'- aCGCCcgcGGCGCGGUcGCCgcCGGcGCGCCc -3'
miRNA:   3'- cGCGG---UUGCGCCA-UGGa-GCC-CGCGGu -5'
23621 5' -61 NC_005261.1 + 130840 0.69 0.497975
Target:  5'- uGCGCuCAaccuuGCGCGcGcGCCcggcCGGGCGCCGc -3'
miRNA:   3'- -CGCG-GU-----UGCGC-CaUGGa---GCCCGCGGU- -5'
23621 5' -61 NC_005261.1 + 130655 0.66 0.673625
Target:  5'- uCGCCGACGCGcugcuCCUCGGcGaGCCc -3'
miRNA:   3'- cGCGGUUGCGCcau--GGAGCC-CgCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.