miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23623 5' -57.9 NC_005261.1 + 76709 1.06 0.002625
Target:  5'- cUUCGUCGGCGUCGUCAACUGCCCGCAg -3'
miRNA:   3'- -AAGCAGCCGCAGCAGUUGACGGGCGU- -5'
23623 5' -57.9 NC_005261.1 + 75346 0.77 0.232572
Target:  5'- cUUCGUCGGCcUCGUggagCAGCUGCCgGCGu -3'
miRNA:   3'- -AAGCAGCCGcAGCA----GUUGACGGgCGU- -5'
23623 5' -57.9 NC_005261.1 + 13858 0.75 0.330739
Target:  5'- gUCGcCGGCGUCGcCGGCgGCCCGg- -3'
miRNA:   3'- aAGCaGCCGCAGCaGUUGaCGGGCgu -5'
23623 5' -57.9 NC_005261.1 + 24188 0.74 0.345921
Target:  5'- gUCGUCGGCGaggcuccaggaUCGUCGGCgggGuCCUGCAa -3'
miRNA:   3'- aAGCAGCCGC-----------AGCAGUUGa--C-GGGCGU- -5'
23623 5' -57.9 NC_005261.1 + 81428 0.74 0.377761
Target:  5'- --aGgCGGCGUCGUCGGCcGCcCCGCGg -3'
miRNA:   3'- aagCaGCCGCAGCAGUUGaCG-GGCGU- -5'
23623 5' -57.9 NC_005261.1 + 102632 0.73 0.386023
Target:  5'- cUCGgccgCGGCuUCGUCcGCgGCCCGCAg -3'
miRNA:   3'- aAGCa---GCCGcAGCAGuUGaCGGGCGU- -5'
23623 5' -57.9 NC_005261.1 + 93725 0.73 0.389361
Target:  5'- gUCGUCGGCGgcggcagcgcgcgcuUCGuacUCGGCgGCCCGCGc -3'
miRNA:   3'- aAGCAGCCGC---------------AGC---AGUUGaCGGGCGU- -5'
23623 5' -57.9 NC_005261.1 + 134479 0.72 0.465478
Target:  5'- aUCGUgggCGGCGUCGUCGcGCUG-CUGCAc -3'
miRNA:   3'- aAGCA---GCCGCAGCAGU-UGACgGGCGU- -5'
23623 5' -57.9 NC_005261.1 + 12788 0.72 0.484271
Target:  5'- cUCGUCGGCGagcUCGUCGucggcgucGCUGCcguccuCCGCGa -3'
miRNA:   3'- aAGCAGCCGC---AGCAGU--------UGACG------GGCGU- -5'
23623 5' -57.9 NC_005261.1 + 64035 0.71 0.522892
Target:  5'- cUCGUCGGCG-CGgcu-CUGCgCCGCGu -3'
miRNA:   3'- aAGCAGCCGCaGCaguuGACG-GGCGU- -5'
23623 5' -57.9 NC_005261.1 + 94472 0.7 0.542647
Target:  5'- -gCGUCGGCGUCGUCccGCggGCCgGgCAc -3'
miRNA:   3'- aaGCAGCCGCAGCAGu-UGa-CGGgC-GU- -5'
23623 5' -57.9 NC_005261.1 + 104490 0.7 0.562641
Target:  5'- cUCGUCcacGGCGUCGUgCAGCcGCuCCGUg -3'
miRNA:   3'- aAGCAG---CCGCAGCA-GUUGaCG-GGCGu -5'
23623 5' -57.9 NC_005261.1 + 74885 0.7 0.582828
Target:  5'- -gCGgCGGCGgcggaGUCGGCgGCCCGCGc -3'
miRNA:   3'- aaGCaGCCGCag---CAGUUGaCGGGCGU- -5'
23623 5' -57.9 NC_005261.1 + 59867 0.7 0.592978
Target:  5'- -aCGUCGGCcUCGUaCGGgUGCCgGCGg -3'
miRNA:   3'- aaGCAGCCGcAGCA-GUUgACGGgCGU- -5'
23623 5' -57.9 NC_005261.1 + 19676 0.7 0.592978
Target:  5'- -aCGUUGGCGUgGUCcaggGUCCGCAg -3'
miRNA:   3'- aaGCAGCCGCAgCAGuugaCGGGCGU- -5'
23623 5' -57.9 NC_005261.1 + 87405 0.69 0.603157
Target:  5'- cUCGaCGGCGcCGUCGACgggcgcGCCgGCGa -3'
miRNA:   3'- aAGCaGCCGCaGCAGUUGa-----CGGgCGU- -5'
23623 5' -57.9 NC_005261.1 + 103501 0.69 0.603157
Target:  5'- gUCGUCGGCGcCGcggaCGGCggcGUCCGCGg -3'
miRNA:   3'- aAGCAGCCGCaGCa---GUUGa--CGGGCGU- -5'
23623 5' -57.9 NC_005261.1 + 125204 0.69 0.613357
Target:  5'- gUCGUCGGCGcUGUCG-CUGCUauCGCc -3'
miRNA:   3'- aAGCAGCCGCaGCAGUuGACGG--GCGu -5'
23623 5' -57.9 NC_005261.1 + 81335 0.69 0.613357
Target:  5'- gUCGUCGGgGcCGUCGGCggggcggggGCuuGCGg -3'
miRNA:   3'- aAGCAGCCgCaGCAGUUGa--------CGggCGU- -5'
23623 5' -57.9 NC_005261.1 + 63415 0.69 0.623571
Target:  5'- gUCGUCGGCGUccgacucgcCGUCGccggcguaggccGC-GCCCGCc -3'
miRNA:   3'- aAGCAGCCGCA---------GCAGU------------UGaCGGGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.