miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23623 5' -57.9 NC_005261.1 + 323 0.68 0.714811
Target:  5'- -gCGgcugCGGCGgCGgcugCGGCgGCCCGCAg -3'
miRNA:   3'- aaGCa---GCCGCaGCa---GUUGaCGGGCGU- -5'
23623 5' -57.9 NC_005261.1 + 1516 0.67 0.772862
Target:  5'- cUCGUCGG-G-CGcCAGCUccagcgcgcgccGCCCGCAg -3'
miRNA:   3'- aAGCAGCCgCaGCaGUUGA------------CGGGCGU- -5'
23623 5' -57.9 NC_005261.1 + 11856 0.67 0.743308
Target:  5'- gUUCG-CGaGCGcgagCGUCAGCUgcggggcgagcccGCCCGCAc -3'
miRNA:   3'- -AAGCaGC-CGCa---GCAGUUGA-------------CGGGCGU- -5'
23623 5' -57.9 NC_005261.1 + 12788 0.72 0.484271
Target:  5'- cUCGUCGGCGagcUCGUCGucggcgucGCUGCcguccuCCGCGa -3'
miRNA:   3'- aAGCAGCCGC---AGCAGU--------UGACG------GGCGU- -5'
23623 5' -57.9 NC_005261.1 + 13858 0.75 0.330739
Target:  5'- gUCGcCGGCGUCGcCGGCgGCCCGg- -3'
miRNA:   3'- aAGCaGCCGCAGCaGUUGaCGGGCgu -5'
23623 5' -57.9 NC_005261.1 + 19676 0.7 0.592978
Target:  5'- -aCGUUGGCGUgGUCcaggGUCCGCAg -3'
miRNA:   3'- aaGCAGCCGCAgCAGuugaCGGGCGU- -5'
23623 5' -57.9 NC_005261.1 + 24188 0.74 0.345921
Target:  5'- gUCGUCGGCGaggcuccaggaUCGUCGGCgggGuCCUGCAa -3'
miRNA:   3'- aAGCAGCCGC-----------AGCAGUUGa--C-GGGCGU- -5'
23623 5' -57.9 NC_005261.1 + 45619 0.66 0.782152
Target:  5'- -gCGgcgCGGCG-CGgcgCGGCggGCCCGCGc -3'
miRNA:   3'- aaGCa--GCCGCaGCa--GUUGa-CGGGCGU- -5'
23623 5' -57.9 NC_005261.1 + 47709 0.66 0.817881
Target:  5'- gUCGgCGGCGUCGggggccuccUCGGCggacaccagcaGCCCGCu -3'
miRNA:   3'- aAGCaGCCGCAGC---------AGUUGa----------CGGGCGu -5'
23623 5' -57.9 NC_005261.1 + 49255 0.66 0.791308
Target:  5'- -cCG-CGGCGgCGUCGGCgcgcacGUCCGCGa -3'
miRNA:   3'- aaGCaGCCGCaGCAGUUGa-----CGGGCGU- -5'
23623 5' -57.9 NC_005261.1 + 59463 0.66 0.809181
Target:  5'- -cCG-CGGCGUCGgggggCAGC-GCCgGCGc -3'
miRNA:   3'- aaGCaGCCGCAGCa----GUUGaCGGgCGU- -5'
23623 5' -57.9 NC_005261.1 + 59867 0.7 0.592978
Target:  5'- -aCGUCGGCcUCGUaCGGgUGCCgGCGg -3'
miRNA:   3'- aaGCAGCCGcAGCA-GUUgACGGgCGU- -5'
23623 5' -57.9 NC_005261.1 + 63415 0.69 0.623571
Target:  5'- gUCGUCGGCGUccgacucgcCGUCGccggcguaggccGC-GCCCGCc -3'
miRNA:   3'- aAGCAGCCGCA---------GCAGU------------UGaCGGGCGu -5'
23623 5' -57.9 NC_005261.1 + 63835 0.66 0.791308
Target:  5'- cUCGU-GGCG-CGccaccugCAGCUGCCCGaCAa -3'
miRNA:   3'- aAGCAgCCGCaGCa------GUUGACGGGC-GU- -5'
23623 5' -57.9 NC_005261.1 + 64035 0.71 0.522892
Target:  5'- cUCGUCGGCG-CGgcu-CUGCgCCGCGu -3'
miRNA:   3'- aAGCAGCCGCaGCaguuGACG-GGCGU- -5'
23623 5' -57.9 NC_005261.1 + 66039 0.66 0.817881
Target:  5'- --aGUCGGCGgccaCGgcCAGCcccggGCCCGCGg -3'
miRNA:   3'- aagCAGCCGCa---GCa-GUUGa----CGGGCGU- -5'
23623 5' -57.9 NC_005261.1 + 74885 0.7 0.582828
Target:  5'- -gCGgCGGCGgcggaGUCGGCgGCCCGCGc -3'
miRNA:   3'- aaGCaGCCGCag---CAGUUGaCGGGCGU- -5'
23623 5' -57.9 NC_005261.1 + 75346 0.77 0.232572
Target:  5'- cUUCGUCGGCcUCGUggagCAGCUGCCgGCGu -3'
miRNA:   3'- -AAGCAGCCGcAGCA----GUUGACGGgCGU- -5'
23623 5' -57.9 NC_005261.1 + 76709 1.06 0.002625
Target:  5'- cUUCGUCGGCGUCGUCAACUGCCCGCAg -3'
miRNA:   3'- -AAGCAGCCGCAGCAGUUGACGGGCGU- -5'
23623 5' -57.9 NC_005261.1 + 81335 0.69 0.613357
Target:  5'- gUCGUCGGgGcCGUCGGCggggcggggGCuuGCGg -3'
miRNA:   3'- aAGCAGCCgCaGCAGUUGa--------CGggCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.