miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23625 5' -56.3 NC_005261.1 + 73076 1.07 0.002878
Target:  5'- gUGUUCGCCAGGAGCGCGUAGGCGUUGc -3'
miRNA:   3'- -ACAAGCGGUCCUCGCGCAUCCGCAAC- -5'
23625 5' -56.3 NC_005261.1 + 64478 0.75 0.404206
Target:  5'- gGUUCGCCGGGugcAGCGgGUGGcGCGg-- -3'
miRNA:   3'- aCAAGCGGUCC---UCGCgCAUC-CGCaac -5'
23625 5' -56.3 NC_005261.1 + 40721 0.74 0.439752
Target:  5'- ---gCGagGGGGGCGCGUGGGCGUa- -3'
miRNA:   3'- acaaGCggUCCUCGCGCAUCCGCAac -5'
23625 5' -56.3 NC_005261.1 + 46824 0.74 0.452608
Target:  5'- cGcgCGCCAGGcGCGCGUgcucgggaacgagguGGGCGUa- -3'
miRNA:   3'- aCaaGCGGUCCuCGCGCA---------------UCCGCAac -5'
23625 5' -56.3 NC_005261.1 + 98189 0.72 0.535622
Target:  5'- ---cCGCCGGGGGCGCGgcGGGCa--- -3'
miRNA:   3'- acaaGCGGUCCUCGCGCa-UCCGcaac -5'
23625 5' -56.3 NC_005261.1 + 90193 0.72 0.565877
Target:  5'- aGgaCGCaGGGAGCGCGgGGGCGgcGg -3'
miRNA:   3'- aCaaGCGgUCCUCGCGCaUCCGCaaC- -5'
23625 5' -56.3 NC_005261.1 + 58293 0.71 0.576064
Target:  5'- gGcgCGCCgGGGGGCGCGgggaggGGGCGg-- -3'
miRNA:   3'- aCaaGCGG-UCCUCGCGCa-----UCCGCaac -5'
23625 5' -56.3 NC_005261.1 + 88450 0.71 0.576064
Target:  5'- cUGgccgCGCCGcGuGAGCGUGUGGGCGg-- -3'
miRNA:   3'- -ACaa--GCGGU-C-CUCGCGCAUCCGCaac -5'
23625 5' -56.3 NC_005261.1 + 92807 0.71 0.627469
Target:  5'- --gUCGCCGGGcGCGCG--GGCGUg- -3'
miRNA:   3'- acaAGCGGUCCuCGCGCauCCGCAac -5'
23625 5' -56.3 NC_005261.1 + 94545 0.71 0.631598
Target:  5'- cGUUCGCCuucAGGAGCGCcgggucgaacgcgacGUAGGgGg-- -3'
miRNA:   3'- aCAAGCGG---UCCUCGCG---------------CAUCCgCaac -5'
23625 5' -56.3 NC_005261.1 + 64934 0.7 0.64811
Target:  5'- cUGcUCGCCgcccAGGGGCGCGUGcGGCa--- -3'
miRNA:   3'- -ACaAGCGG----UCCUCGCGCAU-CCGcaac -5'
23625 5' -56.3 NC_005261.1 + 118370 0.7 0.64811
Target:  5'- cGggCGCUGGGGcGCGCGgcccgAGGCGcUGg -3'
miRNA:   3'- aCaaGCGGUCCU-CGCGCa----UCCGCaAC- -5'
23625 5' -56.3 NC_005261.1 + 21756 0.7 0.678953
Target:  5'- ---gCGCCuGGAGCGCGcgccGGGCGa-- -3'
miRNA:   3'- acaaGCGGuCCUCGCGCa---UCCGCaac -5'
23625 5' -56.3 NC_005261.1 + 56114 0.7 0.678953
Target:  5'- cGagCGgCGGGAGCGCGccgcaGGGCGggGg -3'
miRNA:   3'- aCaaGCgGUCCUCGCGCa----UCCGCaaC- -5'
23625 5' -56.3 NC_005261.1 + 106817 0.69 0.709442
Target:  5'- aGUggccCGCCAGcAGCGCGUGGuGCGc-- -3'
miRNA:   3'- aCAa---GCGGUCcUCGCGCAUC-CGCaac -5'
23625 5' -56.3 NC_005261.1 + 126930 0.69 0.709442
Target:  5'- cGUUCcagcagcgcgGCCAGGGGCGCc-GGGCGcgGg -3'
miRNA:   3'- aCAAG----------CGGUCCUCGCGcaUCCGCaaC- -5'
23625 5' -56.3 NC_005261.1 + 20841 0.69 0.719485
Target:  5'- cGUUCG-CGGGGGCaGCGU-GGCGg-- -3'
miRNA:   3'- aCAAGCgGUCCUCG-CGCAuCCGCaac -5'
23625 5' -56.3 NC_005261.1 + 14995 0.69 0.719485
Target:  5'- cGgccgCGCCcGGAGCGCGggAGGaggaGUUGu -3'
miRNA:   3'- aCaa--GCGGuCCUCGCGCa-UCCg---CAAC- -5'
23625 5' -56.3 NC_005261.1 + 124807 0.69 0.729451
Target:  5'- cGUcgCGCUcuAGGuGCGCGUAGGCc--- -3'
miRNA:   3'- aCAa-GCGG--UCCuCGCGCAUCCGcaac -5'
23625 5' -56.3 NC_005261.1 + 44194 0.68 0.749117
Target:  5'- ---gCGCCAGcGAGCGCGagcugcAGGCGg-- -3'
miRNA:   3'- acaaGCGGUC-CUCGCGCa-----UCCGCaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.