miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23625 5' -56.3 NC_005261.1 + 13659 0.68 0.753002
Target:  5'- cGUgcCGCCGccgcggggggggcgcGGGGCGCGcGGGCGUg- -3'
miRNA:   3'- aCAa-GCGGU---------------CCUCGCGCaUCCGCAac -5'
23625 5' -56.3 NC_005261.1 + 14835 0.66 0.855775
Target:  5'- ---gCGCCGGGAGCaCGgcagcAGGCGgcGg -3'
miRNA:   3'- acaaGCGGUCCUCGcGCa----UCCGCaaC- -5'
23625 5' -56.3 NC_005261.1 + 14995 0.69 0.719485
Target:  5'- cGgccgCGCCcGGAGCGCGggAGGaggaGUUGu -3'
miRNA:   3'- aCaa--GCGGuCCUCGCGCa-UCCg---CAAC- -5'
23625 5' -56.3 NC_005261.1 + 15950 0.67 0.831369
Target:  5'- aGga-GCCGGGGGCGaGUggcGGGCGggGg -3'
miRNA:   3'- aCaagCGGUCCUCGCgCA---UCCGCaaC- -5'
23625 5' -56.3 NC_005261.1 + 16400 0.67 0.831369
Target:  5'- cGUcgUCGCCGGGcGGUGCGggagAGGCc--- -3'
miRNA:   3'- aCA--AGCGGUCC-UCGCGCa---UCCGcaac -5'
23625 5' -56.3 NC_005261.1 + 18434 0.66 0.878331
Target:  5'- cGUccUCGCCGGGcAGCGCGUucccCGUg- -3'
miRNA:   3'- aCA--AGCGGUCC-UCGCGCAucc-GCAac -5'
23625 5' -56.3 NC_005261.1 + 20841 0.69 0.719485
Target:  5'- cGUUCG-CGGGGGCaGCGU-GGCGg-- -3'
miRNA:   3'- aCAAGCgGUCCUCG-CGCAuCCGCaac -5'
23625 5' -56.3 NC_005261.1 + 21756 0.7 0.678953
Target:  5'- ---gCGCCuGGAGCGCGcgccGGGCGa-- -3'
miRNA:   3'- acaaGCGGuCCUCGCGCa---UCCGCaac -5'
23625 5' -56.3 NC_005261.1 + 22087 0.66 0.855775
Target:  5'- gGggCGCCgcguGGGGGCGgGaGGGCGg-- -3'
miRNA:   3'- aCaaGCGG----UCCUCGCgCaUCCGCaac -5'
23625 5' -56.3 NC_005261.1 + 22736 0.67 0.822855
Target:  5'- ---gCGCCAGucGGGCGCG-GGGCGgcGg -3'
miRNA:   3'- acaaGCGGUC--CUCGCGCaUCCGCaaC- -5'
23625 5' -56.3 NC_005261.1 + 23465 0.66 0.88541
Target:  5'- ---gCGCCAGGccCGCGgcGGCGa-- -3'
miRNA:   3'- acaaGCGGUCCucGCGCauCCGCaac -5'
23625 5' -56.3 NC_005261.1 + 28765 0.67 0.839698
Target:  5'- ----gGCCGGGGGCGCcUGGGCc--- -3'
miRNA:   3'- acaagCGGUCCUCGCGcAUCCGcaac -5'
23625 5' -56.3 NC_005261.1 + 32914 0.66 0.871028
Target:  5'- gGcgCGCguGGGGgGCGgcGGGCGggGg -3'
miRNA:   3'- aCaaGCGguCCUCgCGCa-UCCGCaaC- -5'
23625 5' -56.3 NC_005261.1 + 39992 0.66 0.88541
Target:  5'- ---cCGCCGGcGuGCGUGaAGGCGUa- -3'
miRNA:   3'- acaaGCGGUC-CuCGCGCaUCCGCAac -5'
23625 5' -56.3 NC_005261.1 + 40721 0.74 0.439752
Target:  5'- ---gCGagGGGGGCGCGUGGGCGUa- -3'
miRNA:   3'- acaaGCggUCCUCGCGCAUCCGCAac -5'
23625 5' -56.3 NC_005261.1 + 44194 0.68 0.749117
Target:  5'- ---gCGCCAGcGAGCGCGagcugcAGGCGg-- -3'
miRNA:   3'- acaaGCGGUC-CUCGCGCa-----UCCGCaac -5'
23625 5' -56.3 NC_005261.1 + 44260 0.66 0.855775
Target:  5'- ---aCGCCGcGGcGCGCGgggGGGCGggGc -3'
miRNA:   3'- acaaGCGGU-CCuCGCGCa--UCCGCaaC- -5'
23625 5' -56.3 NC_005261.1 + 45351 0.67 0.830526
Target:  5'- aUGUUCcuggagggcugcaGCgAGGAGCGCGUcgGGGCc--- -3'
miRNA:   3'- -ACAAG-------------CGgUCCUCGCGCA--UCCGcaac -5'
23625 5' -56.3 NC_005261.1 + 46824 0.74 0.452608
Target:  5'- cGcgCGCCAGGcGCGCGUgcucgggaacgagguGGGCGUa- -3'
miRNA:   3'- aCaaGCGGUCCuCGCGCA---------------UCCGCAac -5'
23625 5' -56.3 NC_005261.1 + 49347 0.68 0.758798
Target:  5'- uUGUUCuCCAGcAGCGCGUggAGGaUGUUGa -3'
miRNA:   3'- -ACAAGcGGUCcUCGCGCA--UCC-GCAAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.