miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23625 5' -56.3 NC_005261.1 + 127645 0.67 0.805306
Target:  5'- cGgcggCGCCGGGGggcGCGCGgguucgGGGCGg-- -3'
miRNA:   3'- aCaa--GCGGUCCU---CGCGCa-----UCCGCaac -5'
23625 5' -56.3 NC_005261.1 + 126930 0.69 0.709442
Target:  5'- cGUUCcagcagcgcgGCCAGGGGCGCc-GGGCGcgGg -3'
miRNA:   3'- aCAAG----------CGGUCCUCGCGcaUCCGCaaC- -5'
23625 5' -56.3 NC_005261.1 + 124807 0.69 0.729451
Target:  5'- cGUcgCGCUcuAGGuGCGCGUAGGCc--- -3'
miRNA:   3'- aCAa-GCGG--UCCuCGCGCAUCCGcaac -5'
23625 5' -56.3 NC_005261.1 + 123995 0.68 0.796288
Target:  5'- gGUaCGCCGaGAGCGCGUAGcGCu--- -3'
miRNA:   3'- aCAaGCGGUcCUCGCGCAUC-CGcaac -5'
23625 5' -56.3 NC_005261.1 + 118370 0.7 0.64811
Target:  5'- cGggCGCUGGGGcGCGCGgcccgAGGCGcUGg -3'
miRNA:   3'- aCaaGCGGUCCU-CGCGCa----UCCGCaAC- -5'
23625 5' -56.3 NC_005261.1 + 108169 0.67 0.831369
Target:  5'- cGUcCGCCAGGGcGCGCGgccgcggcuccGGGCGc-- -3'
miRNA:   3'- aCAaGCGGUCCU-CGCGCa----------UCCGCaac -5'
23625 5' -56.3 NC_005261.1 + 106817 0.69 0.709442
Target:  5'- aGUggccCGCCAGcAGCGCGUGGuGCGc-- -3'
miRNA:   3'- aCAa---GCGGUCcUCGCGCAUC-CGCaac -5'
23625 5' -56.3 NC_005261.1 + 99878 0.68 0.777808
Target:  5'- ---cCGCCGcucGGCGCGaGGGCGUUGa -3'
miRNA:   3'- acaaGCGGUcc-UCGCGCaUCCGCAAC- -5'
23625 5' -56.3 NC_005261.1 + 98189 0.72 0.535622
Target:  5'- ---cCGCCGGGGGCGCGgcGGGCa--- -3'
miRNA:   3'- acaaGCGGUCCUCGCGCa-UCCGcaac -5'
23625 5' -56.3 NC_005261.1 + 94545 0.71 0.631598
Target:  5'- cGUUCGCCuucAGGAGCGCcgggucgaacgcgacGUAGGgGg-- -3'
miRNA:   3'- aCAAGCGG---UCCUCGCG---------------CAUCCgCaac -5'
23625 5' -56.3 NC_005261.1 + 92807 0.71 0.627469
Target:  5'- --gUCGCCGGGcGCGCG--GGCGUg- -3'
miRNA:   3'- acaAGCGGUCCuCGCGCauCCGCAac -5'
23625 5' -56.3 NC_005261.1 + 90193 0.72 0.565877
Target:  5'- aGgaCGCaGGGAGCGCGgGGGCGgcGg -3'
miRNA:   3'- aCaaGCGgUCCUCGCGCaUCCGCaaC- -5'
23625 5' -56.3 NC_005261.1 + 88450 0.71 0.576064
Target:  5'- cUGgccgCGCCGcGuGAGCGUGUGGGCGg-- -3'
miRNA:   3'- -ACaa--GCGGU-C-CUCGCGCAUCCGCaac -5'
23625 5' -56.3 NC_005261.1 + 80052 0.67 0.814164
Target:  5'- --gUCGCCacuggcGGcGGGCGCGggGGGCGUg- -3'
miRNA:   3'- acaAGCGG------UC-CUCGCGCa-UCCGCAac -5'
23625 5' -56.3 NC_005261.1 + 73076 1.07 0.002878
Target:  5'- gUGUUCGCCAGGAGCGCGUAGGCGUUGc -3'
miRNA:   3'- -ACAAGCGGUCCUCGCGCAUCCGCAAC- -5'
23625 5' -56.3 NC_005261.1 + 72491 0.67 0.831369
Target:  5'- ---gCGCCAGGAGCGCcgcgcgaagcGGGCGc-- -3'
miRNA:   3'- acaaGCGGUCCUCGCGca--------UCCGCaac -5'
23625 5' -56.3 NC_005261.1 + 66921 0.67 0.839698
Target:  5'- cGUgC-CCAGGAGgGCGUcgaAGGCGg-- -3'
miRNA:   3'- aCAaGcGGUCCUCgCGCA---UCCGCaac -5'
23625 5' -56.3 NC_005261.1 + 64934 0.7 0.64811
Target:  5'- cUGcUCGCCgcccAGGGGCGCGUGcGGCa--- -3'
miRNA:   3'- -ACaAGCGG----UCCUCGCGCAU-CCGcaac -5'
23625 5' -56.3 NC_005261.1 + 64890 0.66 0.847836
Target:  5'- gGgagCGCCGGGuccagcAGCGCGUGguucagcgcGGCGUg- -3'
miRNA:   3'- aCaa-GCGGUCC------UCGCGCAU---------CCGCAac -5'
23625 5' -56.3 NC_005261.1 + 64478 0.75 0.404206
Target:  5'- gGUUCGCCGGGugcAGCGgGUGGcGCGg-- -3'
miRNA:   3'- aCAAGCGGUCC---UCGCgCAUC-CGCaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.