miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23639 5' -55.8 NC_005261.1 + 89260 0.66 0.895635
Target:  5'- cUGUCGUgUgcgggCGACGgGCUGGCgUUCc -3'
miRNA:   3'- cACAGCGgAa----GUUGUgCGGCCGgAAG- -5'
23639 5' -55.8 NC_005261.1 + 29980 0.66 0.895635
Target:  5'- gGUG-CGCCgcCGGCGCGuCCGGCag-Cg -3'
miRNA:   3'- -CACaGCGGaaGUUGUGC-GGCCGgaaG- -5'
23639 5' -55.8 NC_005261.1 + 76385 0.66 0.895635
Target:  5'- cUGcCGCCgcCAACAUaaaaagGCCGGCCg-- -3'
miRNA:   3'- cACaGCGGaaGUUGUG------CGGCCGGaag -5'
23639 5' -55.8 NC_005261.1 + 97855 0.66 0.895635
Target:  5'- -cGcCGCCgcggCAGCGCgGCCGGCa-UCg -3'
miRNA:   3'- caCaGCGGaa--GUUGUG-CGGCCGgaAG- -5'
23639 5' -55.8 NC_005261.1 + 53539 0.66 0.895635
Target:  5'- cGUGUUGCgcuCUUCGGcCGCGCCgcGGCCc-- -3'
miRNA:   3'- -CACAGCG---GAAGUU-GUGCGG--CCGGaag -5'
23639 5' -55.8 NC_005261.1 + 131474 0.66 0.895635
Target:  5'- ---cCGCCUcCGcgaGCGCGCCGucgacGCCUUCu -3'
miRNA:   3'- cacaGCGGAaGU---UGUGCGGC-----CGGAAG- -5'
23639 5' -55.8 NC_005261.1 + 82065 0.66 0.894968
Target:  5'- -cGUCGCCgggUCGACGgcgUGCCgcagcagGGCCUccuUCa -3'
miRNA:   3'- caCAGCGGa--AGUUGU---GCGG-------CCGGA---AG- -5'
23639 5' -55.8 NC_005261.1 + 65730 0.66 0.891596
Target:  5'- aUGgccgCGCCgaacgaaaccuccgUCAGCGCGCCGuCCUUg -3'
miRNA:   3'- cACa---GCGGa-------------AGUUGUGCGGCcGGAAg -5'
23639 5' -55.8 NC_005261.1 + 30305 0.66 0.888856
Target:  5'- -cG-CGCuCUUCAGCcCGCCGGCg--- -3'
miRNA:   3'- caCaGCG-GAAGUUGuGCGGCCGgaag -5'
23639 5' -55.8 NC_005261.1 + 34589 0.66 0.888856
Target:  5'- aGUG-CGgCUUCGACgACGaCGGCCUg- -3'
miRNA:   3'- -CACaGCgGAAGUUG-UGCgGCCGGAag -5'
23639 5' -55.8 NC_005261.1 + 3386 0.66 0.888856
Target:  5'- ----gGCCgcCAGcCGCGCCGGCaCUUCc -3'
miRNA:   3'- cacagCGGaaGUU-GUGCGGCCG-GAAG- -5'
23639 5' -55.8 NC_005261.1 + 33933 0.66 0.888166
Target:  5'- uGUGUCGCCcagCAGgAuggcgccgccuguCGCUGGaCCUUCu -3'
miRNA:   3'- -CACAGCGGaa-GUUgU-------------GCGGCC-GGAAG- -5'
23639 5' -55.8 NC_005261.1 + 116441 0.66 0.886777
Target:  5'- cGUGUCGCCgUUUGAUACGUCGaguguguguguuuuGCCggCg -3'
miRNA:   3'- -CACAGCGG-AAGUUGUGCGGC--------------CGGaaG- -5'
23639 5' -55.8 NC_005261.1 + 66253 0.66 0.881845
Target:  5'- -cGUCGUCacCAGCACGCCGuCCa-- -3'
miRNA:   3'- caCAGCGGaaGUUGUGCGGCcGGaag -5'
23639 5' -55.8 NC_005261.1 + 2377 0.66 0.881845
Target:  5'- -cGcCGCCgcagCGGCGCGCUGGCg--- -3'
miRNA:   3'- caCaGCGGaa--GUUGUGCGGCCGgaag -5'
23639 5' -55.8 NC_005261.1 + 61622 0.66 0.881845
Target:  5'- -aG-CGCCUUCGcCcCGCUGGCCg-- -3'
miRNA:   3'- caCaGCGGAAGUuGuGCGGCCGGaag -5'
23639 5' -55.8 NC_005261.1 + 86867 0.66 0.881845
Target:  5'- -cGcCGCCg--GGCGCGgCGGCCUUg -3'
miRNA:   3'- caCaGCGGaagUUGUGCgGCCGGAAg -5'
23639 5' -55.8 NC_005261.1 + 55795 0.66 0.881845
Target:  5'- -aGUCGC----GGCGCG-CGGCCUUCg -3'
miRNA:   3'- caCAGCGgaagUUGUGCgGCCGGAAG- -5'
23639 5' -55.8 NC_005261.1 + 58339 0.66 0.874605
Target:  5'- ---cCGCCUcgCGGagcCGCGCCGGCCa-- -3'
miRNA:   3'- cacaGCGGAa-GUU---GUGCGGCCGGaag -5'
23639 5' -55.8 NC_005261.1 + 106557 0.66 0.867141
Target:  5'- -cGUCcggGCCggC-GCGCGCCGGCCc-- -3'
miRNA:   3'- caCAG---CGGaaGuUGUGCGGCCGGaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.