miRNA display CGI


Results 41 - 60 of 333 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23641 5' -60.6 NC_005261.1 + 99479 0.66 0.69233
Target:  5'- --gCUggCC-GCUGCGGCCagcGCCGCCGc -3'
miRNA:   3'- gaaGAa-GGuCGGCGUCGG---CGGCGGCc -5'
23641 5' -60.6 NC_005261.1 + 102714 0.66 0.69233
Target:  5'- -gUCUccgCCGcGuCCGCGcCCGCCGCCaGGg -3'
miRNA:   3'- gaAGAa--GGU-C-GGCGUcGGCGGCGG-CC- -5'
23641 5' -60.6 NC_005261.1 + 107113 0.66 0.69233
Target:  5'- -----cCCAGCCGCGccaCCGC-GCCGGc -3'
miRNA:   3'- gaagaaGGUCGGCGUc--GGCGgCGGCC- -5'
23641 5' -60.6 NC_005261.1 + 79837 0.66 0.69233
Target:  5'- --gCggCCAGCgcagCGCuAGCCGCCGCgcUGGg -3'
miRNA:   3'- gaaGaaGGUCG----GCG-UCGGCGGCG--GCC- -5'
23641 5' -60.6 NC_005261.1 + 2772 0.66 0.69233
Target:  5'- -cUCgaggCCcGCCcccgaGgGGCUGCCGCCGGc -3'
miRNA:   3'- gaAGaa--GGuCGG-----CgUCGGCGGCGGCC- -5'
23641 5' -60.6 NC_005261.1 + 92198 0.66 0.69233
Target:  5'- -----gCCGcuGgCGCAGCCGCCgaaGCCGGc -3'
miRNA:   3'- gaagaaGGU--CgGCGUCGGCGG---CGGCC- -5'
23641 5' -60.6 NC_005261.1 + 117733 0.66 0.691347
Target:  5'- ------gCGGCCGCGcgcuggcGCCGCCGCCc- -3'
miRNA:   3'- gaagaagGUCGGCGU-------CGGCGGCGGcc -5'
23641 5' -60.6 NC_005261.1 + 101192 0.66 0.691347
Target:  5'- -----cCCAcGCCGCcgccgccgacuccAGCUGCCGCCGc -3'
miRNA:   3'- gaagaaGGU-CGGCG-------------UCGGCGGCGGCc -5'
23641 5' -60.6 NC_005261.1 + 118584 0.66 0.682487
Target:  5'- ------gCGGCgCGC-GCCGCCGCCGcGg -3'
miRNA:   3'- gaagaagGUCG-GCGuCGGCGGCGGC-C- -5'
23641 5' -60.6 NC_005261.1 + 66205 0.66 0.682487
Target:  5'- -gUCggCCAGCgC-CAGCaCGCCGCCc- -3'
miRNA:   3'- gaAGaaGGUCG-GcGUCG-GCGGCGGcc -5'
23641 5' -60.6 NC_005261.1 + 130126 0.66 0.682487
Target:  5'- --gCgagCC-GCCGCGcGCCGuCCGCCGa -3'
miRNA:   3'- gaaGaa-GGuCGGCGU-CGGC-GGCGGCc -5'
23641 5' -60.6 NC_005261.1 + 98722 0.66 0.682487
Target:  5'- ----gUCCGGCCuuggggGCAcGCgGCCGCgCGGg -3'
miRNA:   3'- gaagaAGGUCGG------CGU-CGgCGGCG-GCC- -5'
23641 5' -60.6 NC_005261.1 + 4459 0.66 0.682487
Target:  5'- ----cUCCAGCgGCGGCggccCGUCGCgCGGc -3'
miRNA:   3'- gaagaAGGUCGgCGUCG----GCGGCG-GCC- -5'
23641 5' -60.6 NC_005261.1 + 72861 0.66 0.6815
Target:  5'- -----cCCAGgcguggaCCGCGGgcagguccgccCCGCCGCCGGg -3'
miRNA:   3'- gaagaaGGUC-------GGCGUC-----------GGCGGCGGCC- -5'
23641 5' -60.6 NC_005261.1 + 50030 0.66 0.672604
Target:  5'- -----cCCAGCCGCcGCgcgacggugcagCGCCGCCGc -3'
miRNA:   3'- gaagaaGGUCGGCGuCG------------GCGGCGGCc -5'
23641 5' -60.6 NC_005261.1 + 15251 0.66 0.672604
Target:  5'- -cUCgcagUgGGCCGCGaucgccccggcGgCGCCGCCGGg -3'
miRNA:   3'- gaAGaa--GgUCGGCGU-----------CgGCGGCGGCC- -5'
23641 5' -60.6 NC_005261.1 + 132392 0.66 0.672604
Target:  5'- -cUgUUCC--CCGaGGCCGCCGCCGa -3'
miRNA:   3'- gaAgAAGGucGGCgUCGGCGGCGGCc -5'
23641 5' -60.6 NC_005261.1 + 551 0.66 0.672604
Target:  5'- ------aCGGCgGCucGGCCGCCGCgCGGu -3'
miRNA:   3'- gaagaagGUCGgCG--UCGGCGGCG-GCC- -5'
23641 5' -60.6 NC_005261.1 + 46246 0.66 0.672604
Target:  5'- -gUCgca-GGCCGCGGCgGCgGCCGc -3'
miRNA:   3'- gaAGaaggUCGGCGUCGgCGgCGGCc -5'
23641 5' -60.6 NC_005261.1 + 119973 0.66 0.672604
Target:  5'- -gUCUccgUCgAGCCcCGGCCGaCGCUGGa -3'
miRNA:   3'- gaAGA---AGgUCGGcGUCGGCgGCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.