miRNA display CGI


Results 21 - 40 of 350 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23647 5' -55.9 NC_005261.1 + 93798 0.66 0.914153
Target:  5'- --gGACGC----CGCGCCgCCgcgCGCCg -3'
miRNA:   3'- gagCUGCGuauuGCGCGGaGGa--GCGG- -5'
23647 5' -55.9 NC_005261.1 + 1311 0.66 0.914153
Target:  5'- -cCGGCgGCGgcACGCG-CUCCgggaCGCCg -3'
miRNA:   3'- gaGCUG-CGUauUGCGCgGAGGa---GCGG- -5'
23647 5' -55.9 NC_005261.1 + 80094 0.66 0.914153
Target:  5'- -cCGGCGC---GCGCGCCgcgguaCCggcuugggCGCCg -3'
miRNA:   3'- gaGCUGCGuauUGCGCGGa-----GGa-------GCGG- -5'
23647 5' -55.9 NC_005261.1 + 101997 0.66 0.914153
Target:  5'- -aCGGCGuCGUaGugGCGCag-CUCGCCg -3'
miRNA:   3'- gaGCUGC-GUA-UugCGCGgagGAGCGG- -5'
23647 5' -55.9 NC_005261.1 + 54239 0.66 0.914153
Target:  5'- -gCGGCGCGcgcucaugugcAGCGCGCC-CUggCGCCg -3'
miRNA:   3'- gaGCUGCGUa----------UUGCGCGGaGGa-GCGG- -5'
23647 5' -55.9 NC_005261.1 + 111351 0.66 0.914153
Target:  5'- -cCGGCGCcgAccGCGCGUCUgCU-GCCc -3'
miRNA:   3'- gaGCUGCGuaU--UGCGCGGAgGAgCGG- -5'
23647 5' -55.9 NC_005261.1 + 133835 0.66 0.914153
Target:  5'- -gCGGcCGCGU-GCGCGCCguggCCggCGCg -3'
miRNA:   3'- gaGCU-GCGUAuUGCGCGGa---GGa-GCGg -5'
23647 5' -55.9 NC_005261.1 + 120366 0.66 0.914153
Target:  5'- -aCGGUGCGcGACgGCGCCgcgcCCUCGCg -3'
miRNA:   3'- gaGCUGCGUaUUG-CGCGGa---GGAGCGg -5'
23647 5' -55.9 NC_005261.1 + 105300 0.66 0.914153
Target:  5'- --gGGCGCGcgAGCGCGgggUCCUCGCa -3'
miRNA:   3'- gagCUGCGUa-UUGCGCgg-AGGAGCGg -5'
23647 5' -55.9 NC_005261.1 + 48518 0.66 0.914153
Target:  5'- uCUUGACGC---GCGCGCCgCCUgGg- -3'
miRNA:   3'- -GAGCUGCGuauUGCGCGGaGGAgCgg -5'
23647 5' -55.9 NC_005261.1 + 56482 0.66 0.912978
Target:  5'- --aGGCGCuggagucuauGCGCGCCUCaggCGCg -3'
miRNA:   3'- gagCUGCGuau-------UGCGCGGAGga-GCGg -5'
23647 5' -55.9 NC_005261.1 + 102232 0.66 0.912387
Target:  5'- cCUCGAuggccgccgucgccCGCugcGCGCucGCCUCCagCGCCc -3'
miRNA:   3'- -GAGCU--------------GCGuauUGCG--CGGAGGa-GCGG- -5'
23647 5' -55.9 NC_005261.1 + 48943 0.66 0.9106
Target:  5'- uCUCGACG----GCGCccGCCUcggugagcacgggcaCCUCGCCc -3'
miRNA:   3'- -GAGCUGCguauUGCG--CGGA---------------GGAGCGG- -5'
23647 5' -55.9 NC_005261.1 + 103879 0.66 0.908183
Target:  5'- -gCGGCGCcgccgggcGGCGCGCCaagCCggGCCa -3'
miRNA:   3'- gaGCUGCGua------UUGCGCGGa--GGagCGG- -5'
23647 5' -55.9 NC_005261.1 + 46152 0.66 0.908183
Target:  5'- -cCGAgCGCGgcACuGCGCC-CCagUCGCCg -3'
miRNA:   3'- gaGCU-GCGUauUG-CGCGGaGG--AGCGG- -5'
23647 5' -55.9 NC_005261.1 + 61159 0.66 0.908183
Target:  5'- -cCGGCGCcgccucGACG-GCCUCUUCGUg -3'
miRNA:   3'- gaGCUGCGua----UUGCgCGGAGGAGCGg -5'
23647 5' -55.9 NC_005261.1 + 48392 0.66 0.908183
Target:  5'- aCUUGGggcuCGCGaAGCGCGCCUUgUgGCUc -3'
miRNA:   3'- -GAGCU----GCGUaUUGCGCGGAGgAgCGG- -5'
23647 5' -55.9 NC_005261.1 + 104154 0.66 0.908183
Target:  5'- gUCGGC-CAc--CGCGCCgUCCgcgggCGCCg -3'
miRNA:   3'- gAGCUGcGUauuGCGCGG-AGGa----GCGG- -5'
23647 5' -55.9 NC_005261.1 + 44019 0.66 0.908183
Target:  5'- uUCGGCGCGgcgGGCG-GCCgCCgCGCg -3'
miRNA:   3'- gAGCUGCGUa--UUGCgCGGaGGaGCGg -5'
23647 5' -55.9 NC_005261.1 + 119257 0.66 0.908183
Target:  5'- aUCuuCGCAUGcGCGCuCCUgCUCGCUg -3'
miRNA:   3'- gAGcuGCGUAU-UGCGcGGAgGAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.