miRNA display CGI


Results 41 - 60 of 350 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23647 5' -55.9 NC_005261.1 + 48392 0.66 0.908183
Target:  5'- aCUUGGggcuCGCGaAGCGCGCCUUgUgGCUc -3'
miRNA:   3'- -GAGCU----GCGUaUUGCGCGGAGgAgCGG- -5'
23647 5' -55.9 NC_005261.1 + 61159 0.66 0.908183
Target:  5'- -cCGGCGCcgccucGACG-GCCUCUUCGUg -3'
miRNA:   3'- gaGCUGCGua----UUGCgCGGAGGAGCGg -5'
23647 5' -55.9 NC_005261.1 + 44019 0.66 0.908183
Target:  5'- uUCGGCGCGgcgGGCG-GCCgCCgCGCg -3'
miRNA:   3'- gAGCUGCGUa--UUGCgCGGaGGaGCGg -5'
23647 5' -55.9 NC_005261.1 + 122167 0.66 0.908183
Target:  5'- gCUCGAcCGCGgccacgAugGCGCCcgUCaCGCCc -3'
miRNA:   3'- -GAGCU-GCGUa-----UugCGCGGa-GGaGCGG- -5'
23647 5' -55.9 NC_005261.1 + 119257 0.66 0.908183
Target:  5'- aUCuuCGCAUGcGCGCuCCUgCUCGCUg -3'
miRNA:   3'- gAGcuGCGUAU-UGCGcGGAgGAGCGG- -5'
23647 5' -55.9 NC_005261.1 + 64012 0.66 0.901979
Target:  5'- aUCaGCGCGUAGgugaGCGUgUUCUCGUCg -3'
miRNA:   3'- gAGcUGCGUAUUg---CGCGgAGGAGCGG- -5'
23647 5' -55.9 NC_005261.1 + 30934 0.66 0.901979
Target:  5'- -cCGGCGCAgccccucgggGGCGgGCCUCgaggccCGCCg -3'
miRNA:   3'- gaGCUGCGUa---------UUGCgCGGAGga----GCGG- -5'
23647 5' -55.9 NC_005261.1 + 133973 0.66 0.901979
Target:  5'- uUUGcCGCAacGACGcCGaCCUCCUCaGCCc -3'
miRNA:   3'- gAGCuGCGUa-UUGC-GC-GGAGGAG-CGG- -5'
23647 5' -55.9 NC_005261.1 + 77468 0.66 0.901979
Target:  5'- -gCGGCuGCAgc-CGCGCC-CC-CGCCc -3'
miRNA:   3'- gaGCUG-CGUauuGCGCGGaGGaGCGG- -5'
23647 5' -55.9 NC_005261.1 + 64819 0.66 0.901979
Target:  5'- -gCGcGCGCGccGCGCGCCgggUCCgcgCGCUg -3'
miRNA:   3'- gaGC-UGCGUauUGCGCGG---AGGa--GCGG- -5'
23647 5' -55.9 NC_005261.1 + 41137 0.66 0.901979
Target:  5'- -gCGugGC---GCGCGCCagC-CGCCg -3'
miRNA:   3'- gaGCugCGuauUGCGCGGagGaGCGG- -5'
23647 5' -55.9 NC_005261.1 + 61098 0.66 0.901979
Target:  5'- gCUCGGcCGCcgAgaucGCGCGCUgcgCCgugCGCUg -3'
miRNA:   3'- -GAGCU-GCGuaU----UGCGCGGa--GGa--GCGG- -5'
23647 5' -55.9 NC_005261.1 + 79883 0.66 0.901979
Target:  5'- cCUCGGCcCAcAGgGCGCgCUCCUUGUUu -3'
miRNA:   3'- -GAGCUGcGUaUUgCGCG-GAGGAGCGG- -5'
23647 5' -55.9 NC_005261.1 + 88760 0.66 0.901979
Target:  5'- aUgGugGCG--GCGCuGCgCUCCUCgGCCc -3'
miRNA:   3'- gAgCugCGUauUGCG-CG-GAGGAG-CGG- -5'
23647 5' -55.9 NC_005261.1 + 77553 0.66 0.901979
Target:  5'- -aCGGCGCcgccgccaGugGCGCCgCCgCGCCc -3'
miRNA:   3'- gaGCUGCGua------UugCGCGGaGGaGCGG- -5'
23647 5' -55.9 NC_005261.1 + 97413 0.66 0.901979
Target:  5'- gCUUGGCG---GGCGCGCCgggCCU-GCCc -3'
miRNA:   3'- -GAGCUGCguaUUGCGCGGa--GGAgCGG- -5'
23647 5' -55.9 NC_005261.1 + 10538 0.66 0.901979
Target:  5'- gCUCGcuguCGCccccGGCGCGCCUgCCggGCCc -3'
miRNA:   3'- -GAGCu---GCGua--UUGCGCGGA-GGagCGG- -5'
23647 5' -55.9 NC_005261.1 + 86084 0.66 0.901979
Target:  5'- -aUGAUGCuc--CGCGCgUUCUCGUCg -3'
miRNA:   3'- gaGCUGCGuauuGCGCGgAGGAGCGG- -5'
23647 5' -55.9 NC_005261.1 + 101887 0.66 0.901345
Target:  5'- --gGGCGCccagccGCGCGCgCUCCUCcucgaaaGCCg -3'
miRNA:   3'- gagCUGCGuau---UGCGCG-GAGGAG-------CGG- -5'
23647 5' -55.9 NC_005261.1 + 104063 0.66 0.895542
Target:  5'- cCUCGGcCGCG-AGCGCGuCCagCUCGgCg -3'
miRNA:   3'- -GAGCU-GCGUaUUGCGC-GGagGAGCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.