Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23648 | 3' | -53.8 | NC_005261.1 | + | 14035 | 0.69 | 0.836454 |
Target: 5'- gCCAGCGgggccaugcgagcGGUCCGCAGGCaGgccGCGUc- -3' miRNA: 3'- -GGUCGU-------------CCAGGUGUUCGaCa--CGCAac -5' |
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23648 | 3' | -53.8 | NC_005261.1 | + | 129715 | 0.66 | 0.952009 |
Target: 5'- -aGGCAGGcCCGCcGGCUGcaGCGg-- -3' miRNA: 3'- ggUCGUCCaGGUGuUCGACa-CGCaac -5' |
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23648 | 3' | -53.8 | NC_005261.1 | + | 130095 | 0.68 | 0.897931 |
Target: 5'- gUAGUAGGUCCGCGccAGCgacUGCGccUUGg -3' miRNA: 3'- gGUCGUCCAGGUGU--UCGac-ACGC--AAC- -5' |
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23648 | 3' | -53.8 | NC_005261.1 | + | 37338 | 0.68 | 0.897931 |
Target: 5'- gCUGGCAGGcaucuuuaUCCGCGGGCgGUGCu--- -3' miRNA: 3'- -GGUCGUCC--------AGGUGUUCGaCACGcaac -5' |
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23648 | 3' | -53.8 | NC_005261.1 | + | 134877 | 0.68 | 0.891155 |
Target: 5'- cCCcGCGGG-CC-CcuGCUGUGCGUUc -3' miRNA: 3'- -GGuCGUCCaGGuGuuCGACACGCAAc -5' |
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23648 | 3' | -53.8 | NC_005261.1 | + | 2498 | 0.68 | 0.884139 |
Target: 5'- gCGGguGGUCCGCGAGCcGcgccGCGa-- -3' miRNA: 3'- gGUCguCCAGGUGUUCGaCa---CGCaac -5' |
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23648 | 3' | -53.8 | NC_005261.1 | + | 54357 | 0.68 | 0.876888 |
Target: 5'- gCCAGUcccAGGUCCGCGGGCa--GCGg-- -3' miRNA: 3'- -GGUCG---UCCAGGUGUUCGacaCGCaac -5' |
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23648 | 3' | -53.8 | NC_005261.1 | + | 39974 | 0.68 | 0.869407 |
Target: 5'- cUCAGCGGGUugcgcgcgCCGCcGGC-GUGCGUg- -3' miRNA: 3'- -GGUCGUCCA--------GGUGuUCGaCACGCAac -5' |
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23648 | 3' | -53.8 | NC_005261.1 | + | 12886 | 0.68 | 0.869407 |
Target: 5'- gCGGCucguuGGUCgGCAGGCUG-GUGUa- -3' miRNA: 3'- gGUCGu----CCAGgUGUUCGACaCGCAac -5' |
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23648 | 3' | -53.8 | NC_005261.1 | + | 98563 | 0.68 | 0.8617 |
Target: 5'- uCCGGCGGGcggccguccUCCGCGGGCUcggGCGa-- -3' miRNA: 3'- -GGUCGUCC---------AGGUGUUCGAca-CGCaac -5' |
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23648 | 3' | -53.8 | NC_005261.1 | + | 76060 | 0.69 | 0.853776 |
Target: 5'- gCCGGCGGGcgCCACcagggcGGGCUGcUGCGc-- -3' miRNA: 3'- -GGUCGUCCa-GGUG------UUCGAC-ACGCaac -5' |
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23648 | 3' | -53.8 | NC_005261.1 | + | 50126 | 1.11 | 0.002767 |
Target: 5'- gCCAGCAGGUCCACAAGCUGUGCGUUGg -3' miRNA: 3'- -GGUCGUCCAGGUGUUCGACACGCAAC- -5' |
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23648 | 3' | -53.8 | NC_005261.1 | + | 28593 | 0.69 | 0.827897 |
Target: 5'- gCCGGCGGG-CCGCccgcgccGAGCUG-GCGg-- -3' miRNA: 3'- -GGUCGUCCaGGUG-------UUCGACaCGCaac -5' |
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23648 | 3' | -53.8 | NC_005261.1 | + | 125355 | 0.7 | 0.792813 |
Target: 5'- uCCAGCAGGcUCCGCcgggcagagGGGCgcuggaacggGUGCGUg- -3' miRNA: 3'- -GGUCGUCC-AGGUG---------UUCGa---------CACGCAac -5' |
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23648 | 3' | -53.8 | NC_005261.1 | + | 36992 | 0.7 | 0.783421 |
Target: 5'- uCCAGCcGGagcCCGCGGGCUGcGCGggGc -3' miRNA: 3'- -GGUCGuCCa--GGUGUUCGACaCGCaaC- -5' |
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23648 | 3' | -53.8 | NC_005261.1 | + | 18673 | 0.7 | 0.783421 |
Target: 5'- cCCAGCGGGcgaaggggCCcCAGGCUGUuGCGg-- -3' miRNA: 3'- -GGUCGUCCa-------GGuGUUCGACA-CGCaac -5' |
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23648 | 3' | -53.8 | NC_005261.1 | + | 91987 | 0.72 | 0.693629 |
Target: 5'- gCAGguGGUCCAgCAGGCggugGUGCa--- -3' miRNA: 3'- gGUCguCCAGGU-GUUCGa---CACGcaac -5' |
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23648 | 3' | -53.8 | NC_005261.1 | + | 100798 | 0.72 | 0.662367 |
Target: 5'- gCCAGCAGGUCCcggaaGGGCgcGUGCGc-- -3' miRNA: 3'- -GGUCGUCCAGGug---UUCGa-CACGCaac -5' |
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23648 | 3' | -53.8 | NC_005261.1 | + | 98060 | 0.72 | 0.662367 |
Target: 5'- gCGGCGGGaCCGCGGGCggcggGUGUGUc- -3' miRNA: 3'- gGUCGUCCaGGUGUUCGa----CACGCAac -5' |
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23648 | 3' | -53.8 | NC_005261.1 | + | 60071 | 0.74 | 0.58893 |
Target: 5'- gCGGCcGGUCCGCGGGCUGcGUGg-- -3' miRNA: 3'- gGUCGuCCAGGUGUUCGACaCGCaac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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