miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23648 3' -53.8 NC_005261.1 + 50126 1.11 0.002767
Target:  5'- gCCAGCAGGUCCACAAGCUGUGCGUUGg -3'
miRNA:   3'- -GGUCGUCCAGGUGUUCGACACGCAAC- -5'
23648 3' -53.8 NC_005261.1 + 39879 0.78 0.369234
Target:  5'- gCCAGCAGG-CCGCGcgcgcGGCUGUGCa--- -3'
miRNA:   3'- -GGUCGUCCaGGUGU-----UCGACACGcaac -5'
23648 3' -53.8 NC_005261.1 + 60071 0.74 0.58893
Target:  5'- gCGGCcGGUCCGCGGGCUGcGUGg-- -3'
miRNA:   3'- gGUCGuCCAGGUGUUCGACaCGCaac -5'
23648 3' -53.8 NC_005261.1 + 98060 0.72 0.662367
Target:  5'- gCGGCGGGaCCGCGGGCggcggGUGUGUc- -3'
miRNA:   3'- gGUCGUCCaGGUGUUCGa----CACGCAac -5'
23648 3' -53.8 NC_005261.1 + 100798 0.72 0.662367
Target:  5'- gCCAGCAGGUCCcggaaGGGCgcGUGCGc-- -3'
miRNA:   3'- -GGUCGUCCAGGug---UUCGa-CACGCaac -5'
23648 3' -53.8 NC_005261.1 + 91987 0.72 0.693629
Target:  5'- gCAGguGGUCCAgCAGGCggugGUGCa--- -3'
miRNA:   3'- gGUCguCCAGGU-GUUCGa---CACGcaac -5'
23648 3' -53.8 NC_005261.1 + 18673 0.7 0.783421
Target:  5'- cCCAGCGGGcgaaggggCCcCAGGCUGUuGCGg-- -3'
miRNA:   3'- -GGUCGUCCa-------GGuGUUCGACA-CGCaac -5'
23648 3' -53.8 NC_005261.1 + 36992 0.7 0.783421
Target:  5'- uCCAGCcGGagcCCGCGGGCUGcGCGggGc -3'
miRNA:   3'- -GGUCGuCCa--GGUGUUCGACaCGCaaC- -5'
23648 3' -53.8 NC_005261.1 + 125355 0.7 0.792813
Target:  5'- uCCAGCAGGcUCCGCcgggcagagGGGCgcuggaacggGUGCGUg- -3'
miRNA:   3'- -GGUCGUCC-AGGUG---------UUCGa---------CACGCAac -5'
23648 3' -53.8 NC_005261.1 + 28593 0.69 0.827897
Target:  5'- gCCGGCGGG-CCGCccgcgccGAGCUG-GCGg-- -3'
miRNA:   3'- -GGUCGUCCaGGUG-------UUCGACaCGCaac -5'
23648 3' -53.8 NC_005261.1 + 14035 0.69 0.836454
Target:  5'- gCCAGCGgggccaugcgagcGGUCCGCAGGCaGgccGCGUc- -3'
miRNA:   3'- -GGUCGU-------------CCAGGUGUUCGaCa--CGCAac -5'
23648 3' -53.8 NC_005261.1 + 76060 0.69 0.853776
Target:  5'- gCCGGCGGGcgCCACcagggcGGGCUGcUGCGc-- -3'
miRNA:   3'- -GGUCGUCCa-GGUG------UUCGAC-ACGCaac -5'
23648 3' -53.8 NC_005261.1 + 98563 0.68 0.8617
Target:  5'- uCCGGCGGGcggccguccUCCGCGGGCUcggGCGa-- -3'
miRNA:   3'- -GGUCGUCC---------AGGUGUUCGAca-CGCaac -5'
23648 3' -53.8 NC_005261.1 + 12886 0.68 0.869407
Target:  5'- gCGGCucguuGGUCgGCAGGCUG-GUGUa- -3'
miRNA:   3'- gGUCGu----CCAGgUGUUCGACaCGCAac -5'
23648 3' -53.8 NC_005261.1 + 39974 0.68 0.869407
Target:  5'- cUCAGCGGGUugcgcgcgCCGCcGGC-GUGCGUg- -3'
miRNA:   3'- -GGUCGUCCA--------GGUGuUCGaCACGCAac -5'
23648 3' -53.8 NC_005261.1 + 54357 0.68 0.876888
Target:  5'- gCCAGUcccAGGUCCGCGGGCa--GCGg-- -3'
miRNA:   3'- -GGUCG---UCCAGGUGUUCGacaCGCaac -5'
23648 3' -53.8 NC_005261.1 + 2498 0.68 0.884139
Target:  5'- gCGGguGGUCCGCGAGCcGcgccGCGa-- -3'
miRNA:   3'- gGUCguCCAGGUGUUCGaCa---CGCaac -5'
23648 3' -53.8 NC_005261.1 + 134877 0.68 0.891155
Target:  5'- cCCcGCGGG-CC-CcuGCUGUGCGUUc -3'
miRNA:   3'- -GGuCGUCCaGGuGuuCGACACGCAAc -5'
23648 3' -53.8 NC_005261.1 + 37338 0.68 0.897931
Target:  5'- gCUGGCAGGcaucuuuaUCCGCGGGCgGUGCu--- -3'
miRNA:   3'- -GGUCGUCC--------AGGUGUUCGaCACGcaac -5'
23648 3' -53.8 NC_005261.1 + 130095 0.68 0.897931
Target:  5'- gUAGUAGGUCCGCGccAGCgacUGCGccUUGg -3'
miRNA:   3'- gGUCGUCCAGGUGU--UCGac-ACGC--AAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.