miRNA display CGI


Results 21 - 40 of 41 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23648 3' -53.8 NC_005261.1 + 63351 0.67 0.928103
Target:  5'- cCCA-CGGGUUCACGguGGCgcgGUGCGg-- -3'
miRNA:   3'- -GGUcGUCCAGGUGU--UCGa--CACGCaac -5'
23648 3' -53.8 NC_005261.1 + 76060 0.69 0.853776
Target:  5'- gCCGGCGGGcgCCACcagggcGGGCUGcUGCGc-- -3'
miRNA:   3'- -GGUCGUCCa-GGUG------UUCGAC-ACGCaac -5'
23648 3' -53.8 NC_005261.1 + 78236 0.67 0.916785
Target:  5'- cUCAGCAG--CCGCAGGC-GUGCGa-- -3'
miRNA:   3'- -GGUCGUCcaGGUGUUCGaCACGCaac -5'
23648 3' -53.8 NC_005261.1 + 85943 0.66 0.933384
Target:  5'- gCGGcCAGGgcgCCGCGgaAGCUG-GCGUg- -3'
miRNA:   3'- gGUC-GUCCa--GGUGU--UCGACaCGCAac -5'
23648 3' -53.8 NC_005261.1 + 87679 0.67 0.923134
Target:  5'- gCCAGCGGuGagucgcagcuccgcgCCGCAAGCaGUGCGa-- -3'
miRNA:   3'- -GGUCGUC-Ca--------------GGUGUUCGaCACGCaac -5'
23648 3' -53.8 NC_005261.1 + 89265 0.66 0.943193
Target:  5'- gUguGCGGG-CgACGGGCUG-GCGUUc -3'
miRNA:   3'- -GguCGUCCaGgUGUUCGACaCGCAAc -5'
23648 3' -53.8 NC_005261.1 + 91987 0.72 0.693629
Target:  5'- gCAGguGGUCCAgCAGGCggugGUGCa--- -3'
miRNA:   3'- gGUCguCCAGGU-GUUCGa---CACGcaac -5'
23648 3' -53.8 NC_005261.1 + 98060 0.72 0.662367
Target:  5'- gCGGCGGGaCCGCGGGCggcggGUGUGUc- -3'
miRNA:   3'- gGUCGUCCaGGUGUUCGa----CACGCAac -5'
23648 3' -53.8 NC_005261.1 + 98153 0.67 0.928103
Target:  5'- gCGGCaAGG-CCGCGGGCggcggGUGUGUc- -3'
miRNA:   3'- gGUCG-UCCaGGUGUUCGa----CACGCAac -5'
23648 3' -53.8 NC_005261.1 + 98563 0.68 0.8617
Target:  5'- uCCGGCGGGcggccguccUCCGCGGGCUcggGCGa-- -3'
miRNA:   3'- -GGUCGUCC---------AGGUGUUCGAca-CGCaac -5'
23648 3' -53.8 NC_005261.1 + 98911 0.67 0.916785
Target:  5'- aCAGCGGGUCgGCGGGgucgGcUGCGggGg -3'
miRNA:   3'- gGUCGUCCAGgUGUUCga--C-ACGCaaC- -5'
23648 3' -53.8 NC_005261.1 + 100798 0.72 0.662367
Target:  5'- gCCAGCAGGUCCcggaaGGGCgcGUGCGc-- -3'
miRNA:   3'- -GGUCGUCCAGGug---UUCGa-CACGCaac -5'
23648 3' -53.8 NC_005261.1 + 104805 0.67 0.910748
Target:  5'- uCCAGCGGGUCCcGCuccgcAGCg--GCGUc- -3'
miRNA:   3'- -GGUCGUCCAGG-UGu----UCGacaCGCAac -5'
23648 3' -53.8 NC_005261.1 + 109873 0.66 0.947724
Target:  5'- gCAGCGGGgcCCGCGGGCgg-GCGc-- -3'
miRNA:   3'- gGUCGUCCa-GGUGUUCGacaCGCaac -5'
23648 3' -53.8 NC_005261.1 + 117466 0.67 0.916785
Target:  5'- gCGGCAGGUCgGCGGcgacgcGCUGcUGCGc-- -3'
miRNA:   3'- gGUCGUCCAGgUGUU------CGAC-ACGCaac -5'
23648 3' -53.8 NC_005261.1 + 123506 0.66 0.933384
Target:  5'- aCCAGCGGcagugccgcGUCCgcuaGCAAGCUGUaccgcgcgaGCGUg- -3'
miRNA:   3'- -GGUCGUC---------CAGG----UGUUCGACA---------CGCAac -5'
23648 3' -53.8 NC_005261.1 + 125355 0.7 0.792813
Target:  5'- uCCAGCAGGcUCCGCcgggcagagGGGCgcuggaacggGUGCGUg- -3'
miRNA:   3'- -GGUCGUCC-AGGUG---------UUCGa---------CACGCAac -5'
23648 3' -53.8 NC_005261.1 + 129381 0.67 0.92257
Target:  5'- gCGGCuucGGGUCCAcCGGGCUGUGa---- -3'
miRNA:   3'- gGUCG---UCCAGGU-GUUCGACACgcaac -5'
23648 3' -53.8 NC_005261.1 + 129715 0.66 0.952009
Target:  5'- -aGGCAGGcCCGCcGGCUGcaGCGg-- -3'
miRNA:   3'- ggUCGUCCaGGUGuUCGACa-CGCaac -5'
23648 3' -53.8 NC_005261.1 + 130095 0.68 0.897931
Target:  5'- gUAGUAGGUCCGCGccAGCgacUGCGccUUGg -3'
miRNA:   3'- gGUCGUCCAGGUGU--UCGac-ACGC--AAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.