miRNA display CGI


Results 1 - 20 of 490 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23649 5' -60.8 NC_005261.1 + 99663 0.66 0.723127
Target:  5'- aGCACGCuGAC--CGuCGUCAGCGCGc- -3'
miRNA:   3'- -CGUGCGcCUGcaGC-GCGGUCGCGCuc -5'
23649 5' -60.8 NC_005261.1 + 90067 0.66 0.723127
Target:  5'- gGCGCcccGCGGGCGcCGagGgCAGCGaCGGGg -3'
miRNA:   3'- -CGUG---CGCCUGCaGCg-CgGUCGC-GCUC- -5'
23649 5' -60.8 NC_005261.1 + 32350 0.66 0.723127
Target:  5'- -gACGCGGACca-GgGCCcGCGgGAGa -3'
miRNA:   3'- cgUGCGCCUGcagCgCGGuCGCgCUC- -5'
23649 5' -60.8 NC_005261.1 + 67613 0.66 0.723127
Target:  5'- -aAgGCGGACGcCGCGCCAaagaccacguacGC-CGAGn -3'
miRNA:   3'- cgUgCGCCUGCaGCGCGGU------------CGcGCUC- -5'
23649 5' -60.8 NC_005261.1 + 97741 0.66 0.723127
Target:  5'- gGCugGCagGGGCGgggCGgGCUcggcGGCGCGGc -3'
miRNA:   3'- -CGugCG--CCUGCa--GCgCGG----UCGCGCUc -5'
23649 5' -60.8 NC_005261.1 + 20120 0.66 0.723127
Target:  5'- gGCGCGCGGGCccgcaGCGgCucCGCGAGc -3'
miRNA:   3'- -CGUGCGCCUGcag--CGCgGucGCGCUC- -5'
23649 5' -60.8 NC_005261.1 + 85023 0.66 0.723127
Target:  5'- uCGCGCGGcCGcCGCGCCccGGCcacgaucgccGUGAGc -3'
miRNA:   3'- cGUGCGCCuGCaGCGCGG--UCG----------CGCUC- -5'
23649 5' -60.8 NC_005261.1 + 118496 0.66 0.723127
Target:  5'- gGCGCuGCGGACccUgGCGCC-GCucgGCGAGg -3'
miRNA:   3'- -CGUG-CGCCUGc-AgCGCGGuCG---CGCUC- -5'
23649 5' -60.8 NC_005261.1 + 51883 0.66 0.723127
Target:  5'- cCGCGCGGcagcaGCGgCGCGCUacaucgcccgGGCGCGcAGc -3'
miRNA:   3'- cGUGCGCC-----UGCaGCGCGG----------UCGCGC-UC- -5'
23649 5' -60.8 NC_005261.1 + 14851 0.66 0.723127
Target:  5'- aGCAgGCGGcgGCGcaUCGCGCaguucgccaucgCGGCGCaGAGc -3'
miRNA:   3'- -CGUgCGCC--UGC--AGCGCG------------GUCGCG-CUC- -5'
23649 5' -60.8 NC_005261.1 + 126445 0.66 0.723127
Target:  5'- uGCGCaaaGGccaGcCGCGCCAGCGCGc- -3'
miRNA:   3'- -CGUGcg-CCug-CaGCGCGGUCGCGCuc -5'
23649 5' -60.8 NC_005261.1 + 130797 0.66 0.723127
Target:  5'- cGCAcCGCGGACGaCGC-CCAauaCGuCGAGg -3'
miRNA:   3'- -CGU-GCGCCUGCaGCGcGGUc--GC-GCUC- -5'
23649 5' -60.8 NC_005261.1 + 114052 0.66 0.722171
Target:  5'- -gACGCcaaGGACGUgGCGCggcucagCGGCGcCGAGc -3'
miRNA:   3'- cgUGCG---CCUGCAgCGCG-------GUCGC-GCUC- -5'
23649 5' -60.8 NC_005261.1 + 115286 0.66 0.721215
Target:  5'- -gACGCGGGCagcagccgcaaCGCGUCGGCGCa-- -3'
miRNA:   3'- cgUGCGCCUGca---------GCGCGGUCGCGcuc -5'
23649 5' -60.8 NC_005261.1 + 120009 0.66 0.713542
Target:  5'- gGCuACGCGGcCGUgugcCGCGCC-GC-CGAGu -3'
miRNA:   3'- -CG-UGCGCCuGCA----GCGCGGuCGcGCUC- -5'
23649 5' -60.8 NC_005261.1 + 20447 0.66 0.713542
Target:  5'- -aGCGCaGACGUgccCGCGCgGGUGUGGc -3'
miRNA:   3'- cgUGCGcCUGCA---GCGCGgUCGCGCUc -5'
23649 5' -60.8 NC_005261.1 + 106192 0.66 0.713542
Target:  5'- cGCGCGCGuGGCGcCguuuaaacaaaaGCGCCcgcggccgccuGGCGCGGc -3'
miRNA:   3'- -CGUGCGC-CUGCaG------------CGCGG-----------UCGCGCUc -5'
23649 5' -60.8 NC_005261.1 + 3426 0.66 0.713542
Target:  5'- aGCGCGCGGGCca-GCGuCCAG-GCGn- -3'
miRNA:   3'- -CGUGCGCCUGcagCGC-GGUCgCGCuc -5'
23649 5' -60.8 NC_005261.1 + 114274 0.66 0.713542
Target:  5'- -gACGCGGugGcgCGCGCgGGCuacGUGGa -3'
miRNA:   3'- cgUGCGCCugCa-GCGCGgUCG---CGCUc -5'
23649 5' -60.8 NC_005261.1 + 33787 0.66 0.713542
Target:  5'- -aGCGCuGGGCccCGCGCgGGCgGCGGGc -3'
miRNA:   3'- cgUGCG-CCUGcaGCGCGgUCG-CGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.