Results 1 - 20 of 37 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23651 | 3' | -57.3 | NC_005261.1 | + | 46839 | 1.09 | 0.002045 |
Target: 5'- cGUGCUCGGGAACGAGGUGGGCGUACAg -3' miRNA: 3'- -CACGAGCCCUUGCUCCACCCGCAUGU- -5' |
|||||||
23651 | 3' | -57.3 | NC_005261.1 | + | 98821 | 0.75 | 0.330739 |
Target: 5'- cGUGC-CGGaaGACGgggGGGUGGGCGUACAg -3' miRNA: 3'- -CACGaGCCc-UUGC---UCCACCCGCAUGU- -5' |
|||||||
23651 | 3' | -57.3 | NC_005261.1 | + | 98344 | 0.72 | 0.474828 |
Target: 5'- cGUGUcgacgCGGGGGCgGGGGUGGGCGcggGCu -3' miRNA: 3'- -CACGa----GCCCUUG-CUCCACCCGCa--UGu -5' |
|||||||
23651 | 3' | -57.3 | NC_005261.1 | + | 92788 | 0.72 | 0.484271 |
Target: 5'- -gGCUCGGGGuCGGGGUccggucgccGGGCGcGCGg -3' miRNA: 3'- caCGAGCCCUuGCUCCA---------CCCGCaUGU- -5' |
|||||||
23651 | 3' | -57.3 | NC_005261.1 | + | 74 | 0.72 | 0.484271 |
Target: 5'- -cGCgcgCGGGGGCGGGGUgcgGGGCGcGCc -3' miRNA: 3'- caCGa--GCCCUUGCUCCA---CCCGCaUGu -5' |
|||||||
23651 | 3' | -57.3 | NC_005261.1 | + | 137757 | 0.72 | 0.484271 |
Target: 5'- -cGCgcgCGGGGGCGGGGUgcgGGGCGcGCc -3' miRNA: 3'- caCGa--GCCCUUGCUCCA---CCCGCaUGu -5' |
|||||||
23651 | 3' | -57.3 | NC_005261.1 | + | 70578 | 0.71 | 0.582828 |
Target: 5'- -aGCUCGGGcGCGAGcgcaGcGGCGUGCGc -3' miRNA: 3'- caCGAGCCCuUGCUCca--C-CCGCAUGU- -5' |
|||||||
23651 | 3' | -57.3 | NC_005261.1 | + | 118666 | 0.71 | 0.582828 |
Target: 5'- -cGCUCGGGGcUGAGGgcggcGGGCGcugGCGc -3' miRNA: 3'- caCGAGCCCUuGCUCCa----CCCGCa--UGU- -5' |
|||||||
23651 | 3' | -57.3 | NC_005261.1 | + | 115054 | 0.7 | 0.613357 |
Target: 5'- -gGCgaagGGGGGCGGGGUGGGgaUGUGCu -3' miRNA: 3'- caCGag--CCCUUGCUCCACCC--GCAUGu -5' |
|||||||
23651 | 3' | -57.3 | NC_005261.1 | + | 92716 | 0.7 | 0.613357 |
Target: 5'- -aGCgggagCGGGAGCGGGaGcgGGGCGgggACAg -3' miRNA: 3'- caCGa----GCCCUUGCUC-Ca-CCCGCa--UGU- -5' |
|||||||
23651 | 3' | -57.3 | NC_005261.1 | + | 56058 | 0.7 | 0.613357 |
Target: 5'- aUGUUCGGGGGCGcccUGGGCGaGCAg -3' miRNA: 3'- cACGAGCCCUUGCuccACCCGCaUGU- -5' |
|||||||
23651 | 3' | -57.3 | NC_005261.1 | + | 110788 | 0.7 | 0.623571 |
Target: 5'- cGUGCUcCGGGGgacggcggGCGAGGaggcggGGGCGgACGg -3' miRNA: 3'- -CACGA-GCCCU--------UGCUCCa-----CCCGCaUGU- -5' |
|||||||
23651 | 3' | -57.3 | NC_005261.1 | + | 9607 | 0.7 | 0.633792 |
Target: 5'- -cGcCUCGGGccCGGGGUGGGCagGCGg -3' miRNA: 3'- caC-GAGCCCuuGCUCCACCCGcaUGU- -5' |
|||||||
23651 | 3' | -57.3 | NC_005261.1 | + | 44884 | 0.69 | 0.654221 |
Target: 5'- -aGCgccgCGGGGAUGGccgGGGCGUACAc -3' miRNA: 3'- caCGa---GCCCUUGCUccaCCCGCAUGU- -5' |
|||||||
23651 | 3' | -57.3 | NC_005261.1 | + | 13717 | 0.69 | 0.654221 |
Target: 5'- -gGCg-GGGGugGGGGUGGGgGUGg- -3' miRNA: 3'- caCGagCCCUugCUCCACCCgCAUgu -5' |
|||||||
23651 | 3' | -57.3 | NC_005261.1 | + | 44961 | 0.69 | 0.664413 |
Target: 5'- cUGCUgCGGGAcgcgcGCGAGGgcccGGGCGgGCc -3' miRNA: 3'- cACGA-GCCCU-----UGCUCCa---CCCGCaUGu -5' |
|||||||
23651 | 3' | -57.3 | NC_005261.1 | + | 26829 | 0.69 | 0.664413 |
Target: 5'- cUGCUCuGGGAGgGGggcGGUGGGCGg--- -3' miRNA: 3'- cACGAG-CCCUUgCU---CCACCCGCaugu -5' |
|||||||
23651 | 3' | -57.3 | NC_005261.1 | + | 98494 | 0.69 | 0.6948 |
Target: 5'- -gGCUCGGGcGgGuaAGGUGccGGCGUACGg -3' miRNA: 3'- caCGAGCCCuUgC--UCCAC--CCGCAUGU- -5' |
|||||||
23651 | 3' | -57.3 | NC_005261.1 | + | 119708 | 0.69 | 0.6948 |
Target: 5'- -cGCgCGGcGAUGAGGaGGGCGUGCc -3' miRNA: 3'- caCGaGCCcUUGCUCCaCCCGCAUGu -5' |
|||||||
23651 | 3' | -57.3 | NC_005261.1 | + | 24126 | 0.68 | 0.714811 |
Target: 5'- -gGCgggggUGGGGGCuGGGUGGGCGggGCu -3' miRNA: 3'- caCGa----GCCCUUGcUCCACCCGCa-UGu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home