miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23651 3' -57.3 NC_005261.1 + 74 0.72 0.484271
Target:  5'- -cGCgcgCGGGGGCGGGGUgcgGGGCGcGCc -3'
miRNA:   3'- caCGa--GCCCUUGCUCCA---CCCGCaUGu -5'
23651 3' -57.3 NC_005261.1 + 9607 0.7 0.633792
Target:  5'- -cGcCUCGGGccCGGGGUGGGCagGCGg -3'
miRNA:   3'- caC-GAGCCCuuGCUCCACCCGcaUGU- -5'
23651 3' -57.3 NC_005261.1 + 13717 0.69 0.654221
Target:  5'- -gGCg-GGGGugGGGGUGGGgGUGg- -3'
miRNA:   3'- caCGagCCCUugCUCCACCCgCAUgu -5'
23651 3' -57.3 NC_005261.1 + 15154 0.67 0.80032
Target:  5'- -cGUcCGcGGugGGGGUGGGCGUAg- -3'
miRNA:   3'- caCGaGCcCUugCUCCACCCGCAUgu -5'
23651 3' -57.3 NC_005261.1 + 16177 0.66 0.826414
Target:  5'- -gGCgCGGGcguGGCgGGGGUGGGCGgggGCc -3'
miRNA:   3'- caCGaGCCC---UUG-CUCCACCCGCa--UGu -5'
23651 3' -57.3 NC_005261.1 + 24012 0.67 0.762499
Target:  5'- cUGCUaggggaGGGGGCGgagcgcgggguucGGGUGGGCGUc-- -3'
miRNA:   3'- cACGAg-----CCCUUGC-------------UCCACCCGCAugu -5'
23651 3' -57.3 NC_005261.1 + 24126 0.68 0.714811
Target:  5'- -gGCgggggUGGGGGCuGGGUGGGCGggGCu -3'
miRNA:   3'- caCGa----GCCCUUGcUCCACCCGCa-UGu -5'
23651 3' -57.3 NC_005261.1 + 24278 0.67 0.809181
Target:  5'- -gGCUUGcccGGGugGGGGUGGGgGgcCAg -3'
miRNA:   3'- caCGAGC---CCUugCUCCACCCgCauGU- -5'
23651 3' -57.3 NC_005261.1 + 26829 0.69 0.664413
Target:  5'- cUGCUCuGGGAGgGGggcGGUGGGCGg--- -3'
miRNA:   3'- cACGAG-CCCUUgCU---CCACCCGCaugu -5'
23651 3' -57.3 NC_005261.1 + 27246 0.66 0.817881
Target:  5'- -cGCcUGGGGugGGGcG-GGGUGUGCGg -3'
miRNA:   3'- caCGaGCCCUugCUC-CaCCCGCAUGU- -5'
23651 3' -57.3 NC_005261.1 + 30577 0.66 0.842942
Target:  5'- -cGgaCGGGGACGGGGacgGGGaCGgggACGg -3'
miRNA:   3'- caCgaGCCCUUGCUCCa--CCC-GCa--UGU- -5'
23651 3' -57.3 NC_005261.1 + 42985 0.68 0.753916
Target:  5'- cUGCUgGGGGAgcugggcuacacCGAGGgccaGGGCGUguACAg -3'
miRNA:   3'- cACGAgCCCUU------------GCUCCa---CCCGCA--UGU- -5'
23651 3' -57.3 NC_005261.1 + 43770 0.67 0.763447
Target:  5'- gGUGCUCGuGGGGCGGcgcgcGGaGGGCGccGCGg -3'
miRNA:   3'- -CACGAGC-CCUUGCU-----CCaCCCGCa-UGU- -5'
23651 3' -57.3 NC_005261.1 + 44884 0.69 0.654221
Target:  5'- -aGCgccgCGGGGAUGGccgGGGCGUACAc -3'
miRNA:   3'- caCGa---GCCCUUGCUccaCCCGCAUGU- -5'
23651 3' -57.3 NC_005261.1 + 44961 0.69 0.664413
Target:  5'- cUGCUgCGGGAcgcgcGCGAGGgcccGGGCGgGCc -3'
miRNA:   3'- cACGA-GCCCU-----UGCUCCa---CCCGCaUGu -5'
23651 3' -57.3 NC_005261.1 + 46839 1.09 0.002045
Target:  5'- cGUGCUCGGGAACGAGGUGGGCGUACAg -3'
miRNA:   3'- -CACGAGCCCUUGCUCCACCCGCAUGU- -5'
23651 3' -57.3 NC_005261.1 + 50628 0.66 0.842942
Target:  5'- gGUGCUccacgCGGGcGGCGGGGUGGcGCcgGCGa -3'
miRNA:   3'- -CACGA-----GCCC-UUGCUCCACC-CGcaUGU- -5'
23651 3' -57.3 NC_005261.1 + 56003 0.66 0.850924
Target:  5'- -cGCggCGGGGGCGGGGgcgGGGaagACGc -3'
miRNA:   3'- caCGa-GCCCUUGCUCCa--CCCgcaUGU- -5'
23651 3' -57.3 NC_005261.1 + 56058 0.7 0.613357
Target:  5'- aUGUUCGGGGGCGcccUGGGCGaGCAg -3'
miRNA:   3'- cACGAGCCCUUGCuccACCCGCaUGU- -5'
23651 3' -57.3 NC_005261.1 + 57188 0.66 0.842942
Target:  5'- -gGUcggCGGGAAgGGGGggggGGGCGcGCGg -3'
miRNA:   3'- caCGa--GCCCUUgCUCCa---CCCGCaUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.