miRNA display CGI


Results 21 - 40 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23653 5' -57.9 NC_005261.1 + 119059 0.72 0.459895
Target:  5'- cGCgGCCGCGCgugUGCUuucGUgGCCCGGg -3'
miRNA:   3'- aCGaCGGCGUGau-GCGA---CAaCGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 77073 0.72 0.459895
Target:  5'- cGgUGCCGCGCgagGCGCUG--GCgCGGa -3'
miRNA:   3'- aCgACGGCGUGa--UGCGACaaCGgGCC- -5'
23653 5' -57.9 NC_005261.1 + 118004 0.72 0.472913
Target:  5'- gGCgGCgGCGCUggACGCUGUcggacgcacgcgggGCCCGGc -3'
miRNA:   3'- aCGaCGgCGUGA--UGCGACAa-------------CGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 84818 0.72 0.477608
Target:  5'- cGCUGCCGUugUauugcugAUGCUGagGCCCa- -3'
miRNA:   3'- aCGACGGCGugA-------UGCGACaaCGGGcc -5'
23653 5' -57.9 NC_005261.1 + 113303 0.72 0.478549
Target:  5'- cGCUGCCGCGg-GC-CUGg-GCCCGGc -3'
miRNA:   3'- aCGACGGCGUgaUGcGACaaCGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 122302 0.72 0.478549
Target:  5'- cGCUGCCGCAg-GCGac---GCCCGGg -3'
miRNA:   3'- aCGACGGCGUgaUGCgacaaCGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 133356 0.72 0.491826
Target:  5'- cGCUGCCGCGCagggcuucggcugccUGCGCgcg-GCCCa- -3'
miRNA:   3'- aCGACGGCGUG---------------AUGCGacaaCGGGcc -5'
23653 5' -57.9 NC_005261.1 + 55745 0.71 0.497568
Target:  5'- gUGCUGCCGgACggccucgACGCgcgccgccGCCCGGa -3'
miRNA:   3'- -ACGACGGCgUGa------UGCGacaa----CGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 118079 0.71 0.497568
Target:  5'- cGCaGCCGCGCUcgucUGCUGgcgGCCCGc -3'
miRNA:   3'- aCGaCGGCGUGAu---GCGACaa-CGGGCc -5'
23653 5' -57.9 NC_005261.1 + 71940 0.71 0.498528
Target:  5'- gGCUGCCGCGCgccccacuggcgucgGCGC-GggGCgCGGa -3'
miRNA:   3'- aCGACGGCGUGa--------------UGCGaCaaCGgGCC- -5'
23653 5' -57.9 NC_005261.1 + 97401 0.71 0.507203
Target:  5'- cGcCUGCCGCggGCUugGCgGgcGCgCCGGg -3'
miRNA:   3'- aC-GACGGCG--UGAugCGaCaaCG-GGCC- -5'
23653 5' -57.9 NC_005261.1 + 32189 0.71 0.507203
Target:  5'- gGCgGCgCGCGCUGgaGCUGgcGCCCGa -3'
miRNA:   3'- aCGaCG-GCGUGAUg-CGACaaCGGGCc -5'
23653 5' -57.9 NC_005261.1 + 111757 0.71 0.516918
Target:  5'- gGCaGCUcguGCAcCUGCGCUGcgcGCCCGGg -3'
miRNA:   3'- aCGaCGG---CGU-GAUGCGACaa-CGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 101145 0.71 0.516918
Target:  5'- gGCUGCCGCGCggcgGCGCgcc-GCCgCGa -3'
miRNA:   3'- aCGACGGCGUGa---UGCGacaaCGG-GCc -5'
23653 5' -57.9 NC_005261.1 + 134498 0.71 0.526706
Target:  5'- cGCUGCUGCACUACGagcacaGCCUGc -3'
miRNA:   3'- aCGACGGCGUGAUGCgacaa-CGGGCc -5'
23653 5' -57.9 NC_005261.1 + 29930 0.71 0.526706
Target:  5'- aGCUGgCGgaCGCUGCGCUGcgGCCUGc -3'
miRNA:   3'- aCGACgGC--GUGAUGCGACaaCGGGCc -5'
23653 5' -57.9 NC_005261.1 + 22819 0.71 0.526706
Target:  5'- cGCUGCCGC-CgcCGCcGUUGgCgCCGGg -3'
miRNA:   3'- aCGACGGCGuGauGCGaCAAC-G-GGCC- -5'
23653 5' -57.9 NC_005261.1 + 72776 0.71 0.536562
Target:  5'- gGCgGCCGCGC-ACGCguccGggGCCgCGGa -3'
miRNA:   3'- aCGaCGGCGUGaUGCGa---CaaCGG-GCC- -5'
23653 5' -57.9 NC_005261.1 + 76082 0.7 0.546482
Target:  5'- gGCUGCUGCGCcucgugGCGCUGgaGCUgGa -3'
miRNA:   3'- aCGACGGCGUGa-----UGCGACaaCGGgCc -5'
23653 5' -57.9 NC_005261.1 + 97135 0.7 0.546482
Target:  5'- cGCgGCCaCGCUcggagGCGCUGgcgccgGCCCGGc -3'
miRNA:   3'- aCGaCGGcGUGA-----UGCGACaa----CGGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.