miRNA display CGI


Results 1 - 20 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23653 5' -57.9 NC_005261.1 + 45537 1.09 0.001536
Target:  5'- gUGCUGCCGCACUACGCUGUUGCCCGGc -3'
miRNA:   3'- -ACGACGGCGUGAUGCGACAACGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 44470 0.81 0.1463
Target:  5'- aGCUGCUGCGCUGCuucaaGCUG--GCCCGGa -3'
miRNA:   3'- aCGACGGCGUGAUG-----CGACaaCGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 132372 0.78 0.202979
Target:  5'- cGCUcGCCGCGCUcgcgGCGCUGUUcCCCGa -3'
miRNA:   3'- aCGA-CGGCGUGA----UGCGACAAcGGGCc -5'
23653 5' -57.9 NC_005261.1 + 74060 0.77 0.240813
Target:  5'- gGCUGCgGCAgCUGCGCgacgcgGCCCGGc -3'
miRNA:   3'- aCGACGgCGU-GAUGCGacaa--CGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 59408 0.76 0.284351
Target:  5'- gGCUcGCCgGCGCcgGCGCUGUcgcgcgGCCCGGc -3'
miRNA:   3'- aCGA-CGG-CGUGa-UGCGACAa-----CGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 118204 0.75 0.333129
Target:  5'- cGcCUGCCGCGCUgcgcgggGCGCUGacgGCCgCGGc -3'
miRNA:   3'- aC-GACGGCGUGA-------UGCGACaa-CGG-GCC- -5'
23653 5' -57.9 NC_005261.1 + 107718 0.74 0.349144
Target:  5'- cGCUGCCGCggcaggcgGCUGCGCcucgGCCgCGGg -3'
miRNA:   3'- aCGACGGCG--------UGAUGCGacaaCGG-GCC- -5'
23653 5' -57.9 NC_005261.1 + 73147 0.74 0.364899
Target:  5'- gGCUcgcGCCGCcagGCgGCGUUGUUGCUCGGc -3'
miRNA:   3'- aCGA---CGGCG---UGaUGCGACAACGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 113583 0.74 0.381139
Target:  5'- gGCcGCCGCGCUGgGCgaccucgcGCCCGGg -3'
miRNA:   3'- aCGaCGGCGUGAUgCGacaa----CGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 21656 0.73 0.386936
Target:  5'- cGCUGCCGCACcGCcgguacgugcuccgGCUGggGCUCGa -3'
miRNA:   3'- aCGACGGCGUGaUG--------------CGACaaCGGGCc -5'
23653 5' -57.9 NC_005261.1 + 128543 0.73 0.389438
Target:  5'- gUGCUGCUGCgaacccgacucGCUgGCGCucUGggGCCCGGu -3'
miRNA:   3'- -ACGACGGCG-----------UGA-UGCG--ACaaCGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 124933 0.73 0.389438
Target:  5'- gGCUccGCCGCGC-GCGCUGUgccggcGCCCuGGa -3'
miRNA:   3'- aCGA--CGGCGUGaUGCGACAa-----CGGG-CC- -5'
23653 5' -57.9 NC_005261.1 + 64072 0.73 0.389438
Target:  5'- gGCUGCCGCACggugGCGUaguaguUGgcGCCCa- -3'
miRNA:   3'- aCGACGGCGUGa---UGCG------ACaaCGGGcc -5'
23653 5' -57.9 NC_005261.1 + 51623 0.73 0.389438
Target:  5'- -cCUGUCGCGCUacACGCaagUGcUGCCCGGg -3'
miRNA:   3'- acGACGGCGUGA--UGCG---ACaACGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 54141 0.73 0.42291
Target:  5'- gGCacGCCGCACgcggccgUGCGCgggGUUGCCgGGa -3'
miRNA:   3'- aCGa-CGGCGUG-------AUGCGa--CAACGGgCC- -5'
23653 5' -57.9 NC_005261.1 + 32064 0.73 0.423791
Target:  5'- ---gGCCGCGCagagcgcgGCGCUGggGCUCGGg -3'
miRNA:   3'- acgaCGGCGUGa-------UGCGACaaCGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 29403 0.72 0.441634
Target:  5'- gGCgGCCGCgcGCUACGCgGcgGCCgCGGg -3'
miRNA:   3'- aCGaCGGCG--UGAUGCGaCaaCGG-GCC- -5'
23653 5' -57.9 NC_005261.1 + 118415 0.72 0.441634
Target:  5'- cGCaGCCGCGCUG-GCUGUcgccGCCgCGGa -3'
miRNA:   3'- aCGaCGGCGUGAUgCGACAa---CGG-GCC- -5'
23653 5' -57.9 NC_005261.1 + 131174 0.72 0.450714
Target:  5'- cUGCUGCCGCagcgGCUACGCccGcgGCgCGGu -3'
miRNA:   3'- -ACGACGGCG----UGAUGCGa-CaaCGgGCC- -5'
23653 5' -57.9 NC_005261.1 + 3810 0.72 0.450714
Target:  5'- cGCaGCCGCucgcGCGCUGccgcggGCCCGGg -3'
miRNA:   3'- aCGaCGGCGuga-UGCGACaa----CGGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.