miRNA display CGI


Results 1 - 20 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23653 5' -57.9 NC_005261.1 + 73810 0.66 0.794481
Target:  5'- cGCgcagaaGCCGCGCccGCGCcua-GCCCGGc -3'
miRNA:   3'- aCGa-----CGGCGUGa-UGCGacaaCGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 128812 0.66 0.820853
Target:  5'- gGCgggGCuCGCGCUGCGgCUGacGCUCGc -3'
miRNA:   3'- aCGa--CG-GCGUGAUGC-GACaaCGGGCc -5'
23653 5' -57.9 NC_005261.1 + 9374 0.66 0.794481
Target:  5'- gGgaGCCGCAUUGCGagGUgaGCUCGGc -3'
miRNA:   3'- aCgaCGGCGUGAUGCgaCAa-CGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 134028 0.66 0.785387
Target:  5'- cGCcGCCGCGCU-CGCggccaUGgCCGGc -3'
miRNA:   3'- aCGaCGGCGUGAuGCGaca--ACgGGCC- -5'
23653 5' -57.9 NC_005261.1 + 52352 0.66 0.794481
Target:  5'- cGCUGCCGC-CggaGCcGgaGCCCGcGg -3'
miRNA:   3'- aCGACGGCGuGaugCGaCaaCGGGC-C- -5'
23653 5' -57.9 NC_005261.1 + 127756 0.66 0.785387
Target:  5'- aGCggGCCGCgGCggGCGCgaagacGCCCGGc -3'
miRNA:   3'- aCGa-CGGCG-UGa-UGCGacaa--CGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 34669 0.66 0.794481
Target:  5'- cUGCUGUuuguggcagCGCGCUGCGUgacgGUggGCCCc- -3'
miRNA:   3'- -ACGACG---------GCGUGAUGCGa---CAa-CGGGcc -5'
23653 5' -57.9 NC_005261.1 + 107825 0.66 0.803429
Target:  5'- aGCgGCCGC-CgcCGCcucUGCCCGGu -3'
miRNA:   3'- aCGaCGGCGuGauGCGacaACGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 99863 0.66 0.803429
Target:  5'- gGCcGCCGCGCgcCGCcGccGCUCGGc -3'
miRNA:   3'- aCGaCGGCGUGauGCGaCaaCGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 102428 0.66 0.794481
Target:  5'- cUGCgcgGCCGC-CUccucgGCGCgcc-GCCCGGc -3'
miRNA:   3'- -ACGa--CGGCGuGA-----UGCGacaaCGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 32005 0.66 0.803429
Target:  5'- gUGCcGCCGCGCgaguaccggcaGCGCgUGcUGCCgCGGc -3'
miRNA:   3'- -ACGaCGGCGUGa----------UGCG-ACaACGG-GCC- -5'
23653 5' -57.9 NC_005261.1 + 63920 0.66 0.783552
Target:  5'- -cCUGCCGCACgacCGUgagcccgaaGCCCGGg -3'
miRNA:   3'- acGACGGCGUGau-GCGacaa-----CGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 87941 0.66 0.803429
Target:  5'- cUGgaGCCGCGCgcCGCcacgGCCCGc -3'
miRNA:   3'- -ACgaCGGCGUGauGCGacaaCGGGCc -5'
23653 5' -57.9 NC_005261.1 + 118547 0.66 0.794481
Target:  5'- cUGCgGCgCGCGCgaggACGCcg-UGCCCGc -3'
miRNA:   3'- -ACGaCG-GCGUGa---UGCGacaACGGGCc -5'
23653 5' -57.9 NC_005261.1 + 53533 0.66 0.80254
Target:  5'- gGCUGCCGUGUUGCGCUcuucggccgcgccGcgGCCCaGGc -3'
miRNA:   3'- aCGACGGCGUGAUGCGA-------------CaaCGGG-CC- -5'
23653 5' -57.9 NC_005261.1 + 50739 0.66 0.794481
Target:  5'- cGUcGCCGCAC-GCGCUcgcGCCCGc -3'
miRNA:   3'- aCGaCGGCGUGaUGCGAcaaCGGGCc -5'
23653 5' -57.9 NC_005261.1 + 29254 0.66 0.785387
Target:  5'- cGCgacggGCCGC-CgcCGCUGgaggGCCCGc -3'
miRNA:   3'- aCGa----CGGCGuGauGCGACaa--CGGGCc -5'
23653 5' -57.9 NC_005261.1 + 106585 0.66 0.803429
Target:  5'- gGCcGCCGCGCgGCGCUccu-CCUGGa -3'
miRNA:   3'- aCGaCGGCGUGaUGCGAcaacGGGCC- -5'
23653 5' -57.9 NC_005261.1 + 21749 0.66 0.803429
Target:  5'- gGCUGCUGCGCcuggaGCGCgc--GCCgGGc -3'
miRNA:   3'- aCGACGGCGUGa----UGCGacaaCGGgCC- -5'
23653 5' -57.9 NC_005261.1 + 69361 0.66 0.803429
Target:  5'- cGCgGCCGCGCgcGCGCUGgacCUCGa -3'
miRNA:   3'- aCGaCGGCGUGa-UGCGACaacGGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.