Results 1 - 20 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23658 | 3' | -55.5 | NC_005261.1 | + | 42124 | 1.1 | 0.002341 |
Target: 5'- cAGCCCGGCCUCGUCGAUGACAAUCACg -3' miRNA: 3'- -UCGGGCCGGAGCAGCUACUGUUAGUG- -5' |
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23658 | 3' | -55.5 | NC_005261.1 | + | 46389 | 0.76 | 0.38025 |
Target: 5'- cGGCgCCGGCCcCGUCGccGACGGUgGCg -3' miRNA: 3'- -UCG-GGCCGGaGCAGCuaCUGUUAgUG- -5' |
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23658 | 3' | -55.5 | NC_005261.1 | + | 80339 | 0.76 | 0.38025 |
Target: 5'- cGGcCCCGGCCUCcUCGGUcacGCAGUCGCu -3' miRNA: 3'- -UC-GGGCCGGAGcAGCUAc--UGUUAGUG- -5' |
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23658 | 3' | -55.5 | NC_005261.1 | + | 102344 | 0.75 | 0.441561 |
Target: 5'- cAGCUCGGCCgCGUCGAaGGCGGagCGCg -3' miRNA: 3'- -UCGGGCCGGaGCAGCUaCUGUUa-GUG- -5' |
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23658 | 3' | -55.5 | NC_005261.1 | + | 101514 | 0.74 | 0.47901 |
Target: 5'- cAGCCCGGCgccCUCGUCGcgGuCGcgCGCc -3' miRNA: 3'- -UCGGGCCG---GAGCAGCuaCuGUuaGUG- -5' |
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23658 | 3' | -55.5 | NC_005261.1 | + | 130335 | 0.73 | 0.55809 |
Target: 5'- cGGCCCGGCCgCGcUCGggGACGcgCuGCg -3' miRNA: 3'- -UCGGGCCGGaGC-AGCuaCUGUuaG-UG- -5' |
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23658 | 3' | -55.5 | NC_005261.1 | + | 44010 | 0.73 | 0.527886 |
Target: 5'- cAGCCCGGCUUCGgcgCGGcgGGCGGcCGCc -3' miRNA: 3'- -UCGGGCCGGAGCa--GCUa-CUGUUaGUG- -5' |
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23658 | 3' | -55.5 | NC_005261.1 | + | 6419 | 0.72 | 0.568271 |
Target: 5'- uGGCCCGGCCugcUCG-CGAgGGCGGUC-Cg -3' miRNA: 3'- -UCGGGCCGG---AGCaGCUaCUGUUAGuG- -5' |
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23658 | 3' | -55.5 | NC_005261.1 | + | 130877 | 0.72 | 0.613519 |
Target: 5'- cGGCCUGGCCUCGcucuacauccaccaCGAgcacaaGACGGUCGCc -3' miRNA: 3'- -UCGGGCCGGAGCa-------------GCUa-----CUGUUAGUG- -5' |
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23658 | 3' | -55.5 | NC_005261.1 | + | 96092 | 0.71 | 0.671409 |
Target: 5'- cGGCCCGGCgcaaccugCUUGUCGG-GAC-GUCGCu -3' miRNA: 3'- -UCGGGCCG--------GAGCAGCUaCUGuUAGUG- -5' |
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23658 | 3' | -55.5 | NC_005261.1 | + | 92781 | 0.71 | 0.671409 |
Target: 5'- gAGCCCGGgCUCGgggUCGggGucCGGUCGCc -3' miRNA: 3'- -UCGGGCCgGAGC---AGCuaCu-GUUAGUG- -5' |
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23658 | 3' | -55.5 | NC_005261.1 | + | 59401 | 0.71 | 0.650773 |
Target: 5'- gAGCCCGGgCUCGcCGGcgccGGCGcuGUCGCg -3' miRNA: 3'- -UCGGGCCgGAGCaGCUa---CUGU--UAGUG- -5' |
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23658 | 3' | -55.5 | NC_005261.1 | + | 555 | 0.71 | 0.650773 |
Target: 5'- cGGCUCGGCCgccgCG-CGGUGACAcuaCGCu -3' miRNA: 3'- -UCGGGCCGGa---GCaGCUACUGUua-GUG- -5' |
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23658 | 3' | -55.5 | NC_005261.1 | + | 59455 | 0.7 | 0.732237 |
Target: 5'- cAGCgCGGCCgcggCGUCGGggGGCAG-CGCc -3' miRNA: 3'- -UCGgGCCGGa---GCAGCUa-CUGUUaGUG- -5' |
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23658 | 3' | -55.5 | NC_005261.1 | + | 14361 | 0.7 | 0.722265 |
Target: 5'- cAGCCgCGGCCggggCGgcgCGGUGGCccgcAUCGCc -3' miRNA: 3'- -UCGG-GCCGGa---GCa--GCUACUGu---UAGUG- -5' |
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23658 | 3' | -55.5 | NC_005261.1 | + | 116270 | 0.7 | 0.702094 |
Target: 5'- cGCCCGGCggCGUCguGAUGGCGucgugcuUCACc -3' miRNA: 3'- uCGGGCCGgaGCAG--CUACUGUu------AGUG- -5' |
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23658 | 3' | -55.5 | NC_005261.1 | + | 102453 | 0.7 | 0.702094 |
Target: 5'- cGCCCGGCCUCGgCGc--GCAggCGCc -3' miRNA: 3'- uCGGGCCGGAGCaGCuacUGUuaGUG- -5' |
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23658 | 3' | -55.5 | NC_005261.1 | + | 29330 | 0.7 | 0.702094 |
Target: 5'- cGCCCGGCCgcgugcgcuUCGgcggCGcgGGCGAcacUCGCg -3' miRNA: 3'- uCGGGCCGG---------AGCa---GCuaCUGUU---AGUG- -5' |
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23658 | 3' | -55.5 | NC_005261.1 | + | 31256 | 0.7 | 0.691913 |
Target: 5'- cGCCCGGCgCUCGccuUCGAccccgaggcgcUGGCcgaGAUCGCg -3' miRNA: 3'- uCGGGCCG-GAGC---AGCU-----------ACUG---UUAGUG- -5' |
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23658 | 3' | -55.5 | NC_005261.1 | + | 122317 | 0.69 | 0.77114 |
Target: 5'- cGCCCgGGCCggcgGUCaGGUGGCGcUCGCa -3' miRNA: 3'- uCGGG-CCGGag--CAG-CUACUGUuAGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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