Results 41 - 60 of 474 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23659 | 3' | -58.3 | NC_005261.1 | + | 88273 | 0.66 | 0.816617 |
Target: 5'- gCCGCGCugccuGGACgACGACGGc---GGCg -3' miRNA: 3'- gGGUGCG-----UCUGgUGCUGCCcguaCCG- -5' |
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23659 | 3' | -58.3 | NC_005261.1 | + | 65374 | 0.66 | 0.816617 |
Target: 5'- cCCgCACGCccGGcauuACCuGCGGCGGGUugGGCg -3' miRNA: 3'- -GG-GUGCG--UC----UGG-UGCUGCCCGuaCCG- -5' |
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23659 | 3' | -58.3 | NC_005261.1 | + | 131993 | 0.66 | 0.815769 |
Target: 5'- gCCUucgcaguCGCGGACgGCGACaacuGGGCcgccgucacggacGUGGCc -3' miRNA: 3'- -GGGu------GCGUCUGgUGCUG----CCCG-------------UACCG- -5' |
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23659 | 3' | -58.3 | NC_005261.1 | + | 130785 | 0.66 | 0.814068 |
Target: 5'- cCCCGCGCuGGCCgcaccgcggACGACgcccaauacgucgaGGGCcaGGCc -3' miRNA: 3'- -GGGUGCGuCUGG---------UGCUG--------------CCCGuaCCG- -5' |
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23659 | 3' | -58.3 | NC_005261.1 | + | 49105 | 0.66 | 0.808063 |
Target: 5'- gCgCGCGCAgcagcuccucGAgCGCGGCGGGCG-GGa -3' miRNA: 3'- -GgGUGCGU----------CUgGUGCUGCCCGUaCCg -5' |
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23659 | 3' | -58.3 | NC_005261.1 | + | 73209 | 0.66 | 0.808063 |
Target: 5'- cCCCGgGC--GCCuCGAgGGGCgcgGUGGCc -3' miRNA: 3'- -GGGUgCGucUGGuGCUgCCCG---UACCG- -5' |
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23659 | 3' | -58.3 | NC_005261.1 | + | 133379 | 0.66 | 0.808063 |
Target: 5'- gCCUGCGCGcGGCC-C-ACGGGCGcgcGGCc -3' miRNA: 3'- -GGGUGCGU-CUGGuGcUGCCCGUa--CCG- -5' |
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23659 | 3' | -58.3 | NC_005261.1 | + | 135443 | 0.66 | 0.808063 |
Target: 5'- gCCGCcCAGGCgGCG-CGGGCGcuGCg -3' miRNA: 3'- gGGUGcGUCUGgUGCuGCCCGUacCG- -5' |
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23659 | 3' | -58.3 | NC_005261.1 | + | 51412 | 0.66 | 0.808063 |
Target: 5'- gCCCGCGCGcccACCGCcuGCuGGGCcccgGGCg -3' miRNA: 3'- -GGGUGCGUc--UGGUGc-UG-CCCGua--CCG- -5' |
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23659 | 3' | -58.3 | NC_005261.1 | + | 14784 | 0.66 | 0.808063 |
Target: 5'- cCCCGCGCAGguGCCGCucccGCaGGC-UGcGCa -3' miRNA: 3'- -GGGUGCGUC--UGGUGc---UGcCCGuAC-CG- -5' |
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23659 | 3' | -58.3 | NC_005261.1 | + | 114275 | 0.66 | 0.808063 |
Target: 5'- -aCGCGguGGCgCGCG-CGGGCuacGUGGa -3' miRNA: 3'- ggGUGCguCUG-GUGCuGCCCG---UACCg -5' |
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23659 | 3' | -58.3 | NC_005261.1 | + | 112037 | 0.66 | 0.808063 |
Target: 5'- gCCACGUGGACgAUG-CGGGagccGGCc -3' miRNA: 3'- gGGUGCGUCUGgUGCuGCCCgua-CCG- -5' |
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23659 | 3' | -58.3 | NC_005261.1 | + | 21786 | 0.66 | 0.808063 |
Target: 5'- gCgGCGCGGGCCGCcGCagccgccGGCcgGGCc -3' miRNA: 3'- gGgUGCGUCUGGUGcUGc------CCGuaCCG- -5' |
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23659 | 3' | -58.3 | NC_005261.1 | + | 43096 | 0.66 | 0.808063 |
Target: 5'- gCCGCGC--GCUACGA-GGaCGUGGCg -3' miRNA: 3'- gGGUGCGucUGGUGCUgCCcGUACCG- -5' |
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23659 | 3' | -58.3 | NC_005261.1 | + | 68030 | 0.66 | 0.808063 |
Target: 5'- cCCCGcCGCGGGggacgUCGCGuacuuugucuacGCGGGCAcGGUg -3' miRNA: 3'- -GGGU-GCGUCU-----GGUGC------------UGCCCGUaCCG- -5' |
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23659 | 3' | -58.3 | NC_005261.1 | + | 59428 | 0.66 | 0.808063 |
Target: 5'- gUCGCGCGG-CC-CGGCaGGCGccGGCa -3' miRNA: 3'- gGGUGCGUCuGGuGCUGcCCGUa-CCG- -5' |
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23659 | 3' | -58.3 | NC_005261.1 | + | 56144 | 0.66 | 0.808063 |
Target: 5'- --gGCGCGGGCCGaggGugGcGGCAgcGGCg -3' miRNA: 3'- gggUGCGUCUGGUg--CugC-CCGUa-CCG- -5' |
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23659 | 3' | -58.3 | NC_005261.1 | + | 50770 | 0.66 | 0.808063 |
Target: 5'- aCCCucaGCGCAcACCGCGGCGGc---GGCc -3' miRNA: 3'- -GGG---UGCGUcUGGUGCUGCCcguaCCG- -5' |
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23659 | 3' | -58.3 | NC_005261.1 | + | 56992 | 0.66 | 0.808063 |
Target: 5'- -gCGCGUGGACCACGucaaGGGgGaGGUg -3' miRNA: 3'- ggGUGCGUCUGGUGCug--CCCgUaCCG- -5' |
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23659 | 3' | -58.3 | NC_005261.1 | + | 70471 | 0.66 | 0.808063 |
Target: 5'- gCCCGCGCcgcgGGugCGCGcGCGuGaGCAcguagcUGGCg -3' miRNA: 3'- -GGGUGCG----UCugGUGC-UGC-C-CGU------ACCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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