miRNA display CGI


Results 21 - 40 of 474 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23659 3' -58.3 NC_005261.1 + 43448 0.66 0.833237
Target:  5'- cUCgGCGCcuGGACguCGcCGGGCGggugcUGGCg -3'
miRNA:   3'- -GGgUGCG--UCUGguGCuGCCCGU-----ACCG- -5'
23659 3' -58.3 NC_005261.1 + 118823 0.66 0.833237
Target:  5'- gCCCuggGCGCGGcacuGCCGCucuGCGGcGCGgagGGCg -3'
miRNA:   3'- -GGG---UGCGUC----UGGUGc--UGCC-CGUa--CCG- -5'
23659 3' -58.3 NC_005261.1 + 119703 0.66 0.833237
Target:  5'- cUCCACGCGcGGCgAUGAggaGGGCGUGc- -3'
miRNA:   3'- -GGGUGCGU-CUGgUGCUg--CCCGUACcg -5'
23659 3' -58.3 NC_005261.1 + 93464 0.66 0.832422
Target:  5'- cCCCAgCGCGGuGCCGgGGCGcGCGUcgcccgcGGCg -3'
miRNA:   3'- -GGGU-GCGUC-UGGUgCUGCcCGUA-------CCG- -5'
23659 3' -58.3 NC_005261.1 + 68892 0.66 0.830787
Target:  5'- gCUGCGCGGACgCcgucguccugaagaGCGACcacuGGGCA-GGCa -3'
miRNA:   3'- gGGUGCGUCUG-G--------------UGCUG----CCCGUaCCG- -5'
23659 3' -58.3 NC_005261.1 + 108765 0.66 0.825011
Target:  5'- -gCGCGCcgcGCCACGGCaccauGGGCAccuuccaguUGGCa -3'
miRNA:   3'- ggGUGCGuc-UGGUGCUG-----CCCGU---------ACCG- -5'
23659 3' -58.3 NC_005261.1 + 30409 0.66 0.825011
Target:  5'- -aCAUGCGGGCCGgGgcaccGCGGGCGgaccUGGa -3'
miRNA:   3'- ggGUGCGUCUGGUgC-----UGCCCGU----ACCg -5'
23659 3' -58.3 NC_005261.1 + 126201 0.66 0.825011
Target:  5'- cCCCGCGCGGACCA--GC-GGCAgccccaGCu -3'
miRNA:   3'- -GGGUGCGUCUGGUgcUGcCCGUac----CG- -5'
23659 3' -58.3 NC_005261.1 + 75595 0.66 0.825011
Target:  5'- gCUCGCGCGcGCCGCGgACGcGGac-GGCg -3'
miRNA:   3'- -GGGUGCGUcUGGUGC-UGC-CCguaCCG- -5'
23659 3' -58.3 NC_005261.1 + 81767 0.66 0.825011
Target:  5'- aCgGCGCGGGCCAgGACGaGCuc-GCg -3'
miRNA:   3'- gGgUGCGUCUGGUgCUGCcCGuacCG- -5'
23659 3' -58.3 NC_005261.1 + 127824 0.66 0.825011
Target:  5'- gCUCGCGCucgcGGCCGCGagcaGCGGaCggGGCg -3'
miRNA:   3'- -GGGUGCGu---CUGGUGC----UGCCcGuaCCG- -5'
23659 3' -58.3 NC_005261.1 + 44875 0.66 0.825011
Target:  5'- gCCGcCGC-GAgCGCcGCGGGgAUGGCc -3'
miRNA:   3'- gGGU-GCGuCUgGUGcUGCCCgUACCG- -5'
23659 3' -58.3 NC_005261.1 + 72443 0.66 0.825011
Target:  5'- cCCCG-GCGGGggcgcCCGCGGCGaGCGcGGCg -3'
miRNA:   3'- -GGGUgCGUCU-----GGUGCUGCcCGUaCCG- -5'
23659 3' -58.3 NC_005261.1 + 68543 0.66 0.825011
Target:  5'- gCCCGCGCGcccccuGCUGCG-CGGGCucuuUGaGCg -3'
miRNA:   3'- -GGGUGCGUc-----UGGUGCuGCCCGu---AC-CG- -5'
23659 3' -58.3 NC_005261.1 + 66282 0.66 0.824179
Target:  5'- gCCCGCggcugucGCAGugCGucaGGCGcGGCAcGGCc -3'
miRNA:   3'- -GGGUG-------CGUCugGUg--CUGC-CCGUaCCG- -5'
23659 3' -58.3 NC_005261.1 + 32434 0.66 0.823346
Target:  5'- gCCC-CGCcGGCCugGGCGccGGCAcagucacccccgGGCa -3'
miRNA:   3'- -GGGuGCGuCUGGugCUGC--CCGUa-----------CCG- -5'
23659 3' -58.3 NC_005261.1 + 88273 0.66 0.816617
Target:  5'- gCCGCGCugccuGGACgACGACGGc---GGCg -3'
miRNA:   3'- gGGUGCG-----UCUGgUGCUGCCcguaCCG- -5'
23659 3' -58.3 NC_005261.1 + 74404 0.66 0.816617
Target:  5'- uCCC-CGUuuucGGCCGCgGGCGGGag-GGCc -3'
miRNA:   3'- -GGGuGCGu---CUGGUG-CUGCCCguaCCG- -5'
23659 3' -58.3 NC_005261.1 + 65374 0.66 0.816617
Target:  5'- cCCgCACGCccGGcauuACCuGCGGCGGGUugGGCg -3'
miRNA:   3'- -GG-GUGCG--UC----UGG-UGCUGCCCGuaCCG- -5'
23659 3' -58.3 NC_005261.1 + 89972 0.66 0.816617
Target:  5'- gCCGCGC--GCCAucuuUGACGGGCA--GCa -3'
miRNA:   3'- gGGUGCGucUGGU----GCUGCCCGUacCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.