miRNA display CGI


Results 21 - 40 of 474 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23659 3' -58.3 NC_005261.1 + 32317 0.78 0.228021
Target:  5'- gCCGcCGCGG-CCGCGGCGcccGGCGUGGCc -3'
miRNA:   3'- gGGU-GCGUCuGGUGCUGC---CCGUACCG- -5'
23659 3' -58.3 NC_005261.1 + 41103 0.78 0.230208
Target:  5'- aCCGCGUcGuCCGCGGCGGGCccgagcgcuuccugcGUGGCg -3'
miRNA:   3'- gGGUGCGuCuGGUGCUGCCCG---------------UACCG- -5'
23659 3' -58.3 NC_005261.1 + 109180 0.78 0.23352
Target:  5'- cUCCGCuaGCAGcGCCGCGuCGGGCGUGcGCa -3'
miRNA:   3'- -GGGUG--CGUC-UGGUGCuGCCCGUAC-CG- -5'
23659 3' -58.3 NC_005261.1 + 1176 0.77 0.244852
Target:  5'- gCCCGCGCcgcGGCCGgGGCcgGGGCcgGGCg -3'
miRNA:   3'- -GGGUGCGu--CUGGUgCUG--CCCGuaCCG- -5'
23659 3' -58.3 NC_005261.1 + 33796 0.77 0.250688
Target:  5'- cCCCGCGCGGGCgGCGGgcuugucuuUGGGCGgccggggGGCg -3'
miRNA:   3'- -GGGUGCGUCUGgUGCU---------GCCCGUa------CCG- -5'
23659 3' -58.3 NC_005261.1 + 20436 0.77 0.256637
Target:  5'- uCCCgggggggaGCGCAGAcgugcCCGCG-CGGGUGUGGCg -3'
miRNA:   3'- -GGG--------UGCGUCU-----GGUGCuGCCCGUACCG- -5'
23659 3' -58.3 NC_005261.1 + 97819 0.77 0.256637
Target:  5'- gCCCcCGCAGACgGCGGCaaaaacggGGGCGgcgGGCg -3'
miRNA:   3'- -GGGuGCGUCUGgUGCUG--------CCCGUa--CCG- -5'
23659 3' -58.3 NC_005261.1 + 3665 0.77 0.256637
Target:  5'- --aGCGCAGGCCGCGGCcGGCA-GGCc -3'
miRNA:   3'- gggUGCGUCUGGUGCUGcCCGUaCCG- -5'
23659 3' -58.3 NC_005261.1 + 62824 0.77 0.262702
Target:  5'- gCCGCGCGGGgCAcCGGCGGGgGacUGGCg -3'
miRNA:   3'- gGGUGCGUCUgGU-GCUGCCCgU--ACCG- -5'
23659 3' -58.3 NC_005261.1 + 49450 0.77 0.262702
Target:  5'- gCCCGCGCGcGCCGCGgaagGCGGGCGcgcaGGCc -3'
miRNA:   3'- -GGGUGCGUcUGGUGC----UGCCCGUa---CCG- -5'
23659 3' -58.3 NC_005261.1 + 69283 0.77 0.268883
Target:  5'- gCCCGCGCcGACCcCGGCgcgGGGCgccgGUGGCg -3'
miRNA:   3'- -GGGUGCGuCUGGuGCUG---CCCG----UACCG- -5'
23659 3' -58.3 NC_005261.1 + 60125 0.77 0.268883
Target:  5'- -gCACGUAGGCCGCGAacaCGGGCucccaGGCg -3'
miRNA:   3'- ggGUGCGUCUGGUGCU---GCCCGua---CCG- -5'
23659 3' -58.3 NC_005261.1 + 70697 0.77 0.27518
Target:  5'- gUCCAgCGCGGcCCGCG-CGGGCAcGGCc -3'
miRNA:   3'- -GGGU-GCGUCuGGUGCuGCCCGUaCCG- -5'
23659 3' -58.3 NC_005261.1 + 98736 0.77 0.27518
Target:  5'- -gCACGCGG-CCGCG-CGGGCGuUGGCc -3'
miRNA:   3'- ggGUGCGUCuGGUGCuGCCCGU-ACCG- -5'
23659 3' -58.3 NC_005261.1 + 40029 0.77 0.27518
Target:  5'- gCCCGCaGUcGACCGCGACcaGCGUGGCg -3'
miRNA:   3'- -GGGUG-CGuCUGGUGCUGccCGUACCG- -5'
23659 3' -58.3 NC_005261.1 + 57471 0.77 0.277732
Target:  5'- -gCACGCGGAacaggcucgagucccCCGCGACGGGCAcgucccGGCg -3'
miRNA:   3'- ggGUGCGUCU---------------GGUGCUGCCCGUa-----CCG- -5'
23659 3' -58.3 NC_005261.1 + 3805 0.76 0.280948
Target:  5'- gCUCGCGCAGccgcucgcgcgcuGCCGCGGgccCGGGCGcUGGCg -3'
miRNA:   3'- -GGGUGCGUC-------------UGGUGCU---GCCCGU-ACCG- -5'
23659 3' -58.3 NC_005261.1 + 107250 0.76 0.288128
Target:  5'- gCCCAccCGCGGGCgCGCGggcACGGGCG-GGCg -3'
miRNA:   3'- -GGGU--GCGUCUG-GUGC---UGCCCGUaCCG- -5'
23659 3' -58.3 NC_005261.1 + 118940 0.76 0.288128
Target:  5'- gCCGCGCGGcugGCCGCGGCGcaCGUGGCc -3'
miRNA:   3'- gGGUGCGUC---UGGUGCUGCccGUACCG- -5'
23659 3' -58.3 NC_005261.1 + 38944 0.76 0.288128
Target:  5'- gCCGgGCGGGCCGCGGCGcGCG-GGCu -3'
miRNA:   3'- gGGUgCGUCUGGUGCUGCcCGUaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.