Results 1 - 20 of 474 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23659 | 3' | -58.3 | NC_005261.1 | + | 42013 | 1.12 | 0.001082 |
Target: 5'- aCCCACGCAGACCACGACGGGCAUGGCc -3' miRNA: 3'- -GGGUGCGUCUGGUGCUGCCCGUACCG- -5' |
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23659 | 3' | -58.3 | NC_005261.1 | + | 113028 | 0.85 | 0.077059 |
Target: 5'- cCCCACagaGCGGGCCGCG-CGcGGCGUGGCg -3' miRNA: 3'- -GGGUG---CGUCUGGUGCuGC-CCGUACCG- -5' |
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23659 | 3' | -58.3 | NC_005261.1 | + | 28431 | 0.83 | 0.116629 |
Target: 5'- aCCCGCGCGcACCGCGGCcGGCcAUGGCg -3' miRNA: 3'- -GGGUGCGUcUGGUGCUGcCCG-UACCG- -5' |
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23659 | 3' | -58.3 | NC_005261.1 | + | 95656 | 0.82 | 0.11965 |
Target: 5'- -aCGCGCGGcGCCGCGACGGGCGcgGGUg -3' miRNA: 3'- ggGUGCGUC-UGGUGCUGCCCGUa-CCG- -5' |
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23659 | 3' | -58.3 | NC_005261.1 | + | 10241 | 0.81 | 0.135873 |
Target: 5'- gCCCGCGCAcucGCCGCcGCGGGCcUGGCg -3' miRNA: 3'- -GGGUGCGUc--UGGUGcUGCCCGuACCG- -5' |
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23659 | 3' | -58.3 | NC_005261.1 | + | 68123 | 0.81 | 0.146555 |
Target: 5'- gCUGCGCGGGCCGCGGCGcGGCgaccgcgccGUGGCc -3' miRNA: 3'- gGGUGCGUCUGGUGCUGC-CCG---------UACCG- -5' |
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23659 | 3' | -58.3 | NC_005261.1 | + | 4521 | 0.81 | 0.146555 |
Target: 5'- gCCCGCGCGGgcGCCGCGGCgaGGGCGccgGGCc -3' miRNA: 3'- -GGGUGCGUC--UGGUGCUG--CCCGUa--CCG- -5' |
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23659 | 3' | -58.3 | NC_005261.1 | + | 107509 | 0.81 | 0.146555 |
Target: 5'- gCCACGCAGGCCGCGccgaaGGGCAgcgcgucGGCg -3' miRNA: 3'- gGGUGCGUCUGGUGCug---CCCGUa------CCG- -5' |
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23659 | 3' | -58.3 | NC_005261.1 | + | 71051 | 0.8 | 0.157998 |
Target: 5'- aCCACGCcguGGGCCagccgccgcGCGGCGGGCggGGCg -3' miRNA: 3'- gGGUGCG---UCUGG---------UGCUGCCCGuaCCG- -5' |
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23659 | 3' | -58.3 | NC_005261.1 | + | 123093 | 0.8 | 0.170242 |
Target: 5'- gCCACGCcauuucGCCGCGGCGGGaaaGUGGCg -3' miRNA: 3'- gGGUGCGuc----UGGUGCUGCCCg--UACCG- -5' |
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23659 | 3' | -58.3 | NC_005261.1 | + | 74906 | 0.79 | 0.183327 |
Target: 5'- gCCCGCGCuGGCCGCG-CGGGgGagGGCg -3' miRNA: 3'- -GGGUGCGuCUGGUGCuGCCCgUa-CCG- -5' |
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23659 | 3' | -58.3 | NC_005261.1 | + | 74269 | 0.79 | 0.183327 |
Target: 5'- gCgCGCGCGcGuCCGCGGCGGGCggGGCg -3' miRNA: 3'- -GgGUGCGU-CuGGUGCUGCCCGuaCCG- -5' |
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23659 | 3' | -58.3 | NC_005261.1 | + | 48090 | 0.79 | 0.187423 |
Target: 5'- aCCC-CGCAGAUgcagccggugcugUACGAgaCGGGCAUGGCg -3' miRNA: 3'- -GGGuGCGUCUG-------------GUGCU--GCCCGUACCG- -5' |
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23659 | 3' | -58.3 | NC_005261.1 | + | 77667 | 0.79 | 0.197293 |
Target: 5'- gCCUgcagGCGCAGGgCGCgGACGGGCcgGGCu -3' miRNA: 3'- -GGG----UGCGUCUgGUG-CUGCCCGuaCCG- -5' |
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23659 | 3' | -58.3 | NC_005261.1 | + | 29204 | 0.79 | 0.202151 |
Target: 5'- gCCCGCGCGGGCgCGCGACugGGGCccGcGCa -3' miRNA: 3'- -GGGUGCGUCUG-GUGCUG--CCCGuaC-CG- -5' |
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23659 | 3' | -58.3 | NC_005261.1 | + | 21821 | 0.79 | 0.202151 |
Target: 5'- gCCCGCgGCGGGCgCGCGuGCGGGCG-GGCu -3' miRNA: 3'- -GGGUG-CGUCUG-GUGC-UGCCCGUaCCG- -5' |
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23659 | 3' | -58.3 | NC_005261.1 | + | 83838 | 0.79 | 0.202151 |
Target: 5'- uCCgCugGCGGGCCGCGGCcccgcugggcuGGGCcgGGCc -3' miRNA: 3'- -GG-GugCGUCUGGUGCUG-----------CCCGuaCCG- -5' |
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23659 | 3' | -58.3 | NC_005261.1 | + | 104844 | 0.79 | 0.207113 |
Target: 5'- gCCACGCGGACCGCG-CGGGUcacGCa -3' miRNA: 3'- gGGUGCGUCUGGUGCuGCCCGuacCG- -5' |
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23659 | 3' | -58.3 | NC_005261.1 | + | 127331 | 0.78 | 0.212179 |
Target: 5'- gCCCGCGgGGGCCggaGCGGCGGggcgcugggcccGCGUGGCu -3' miRNA: 3'- -GGGUGCgUCUGG---UGCUGCC------------CGUACCG- -5' |
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23659 | 3' | -58.3 | NC_005261.1 | + | 118660 | 0.78 | 0.217352 |
Target: 5'- gCCGCGCgcucgGGGCUgaggGCGGCGGGCGcUGGCg -3' miRNA: 3'- gGGUGCG-----UCUGG----UGCUGCCCGU-ACCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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