miRNA display CGI


Results 1 - 20 of 474 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23659 3' -58.3 NC_005261.1 + 220 0.75 0.337194
Target:  5'- cCCCuggugcuCGCGGGCCccGCGAgCGGGCccGGCu -3'
miRNA:   3'- -GGGu------GCGUCUGG--UGCU-GCCCGuaCCG- -5'
23659 3' -58.3 NC_005261.1 + 355 0.69 0.626024
Target:  5'- cCCgGCGCGGcCCgGCGGCGguGGCggcgGUGGCg -3'
miRNA:   3'- -GGgUGCGUCuGG-UGCUGC--CCG----UACCG- -5'
23659 3' -58.3 NC_005261.1 + 454 0.71 0.546574
Target:  5'- --gACGgGGGCCGCGACGgccGGCGggaUGGCg -3'
miRNA:   3'- gggUGCgUCUGGUGCUGC---CCGU---ACCG- -5'
23659 3' -58.3 NC_005261.1 + 524 0.7 0.616005
Target:  5'- --gGCGCGGGCgGgCGGgGGGCAgGGCg -3'
miRNA:   3'- gggUGCGUCUGgU-GCUgCCCGUaCCG- -5'
23659 3' -58.3 NC_005261.1 + 982 0.71 0.555391
Target:  5'- gCCgCGCGCAGAgCggaggagacggggGCGGgGGGCGgggGGCg -3'
miRNA:   3'- -GG-GUGCGUCUgG-------------UGCUgCCCGUa--CCG- -5'
23659 3' -58.3 NC_005261.1 + 1031 0.67 0.772396
Target:  5'- gCUUuuGCGGAggGCGGCGGGCGgcGGCg -3'
miRNA:   3'- -GGGugCGUCUggUGCUGCCCGUa-CCG- -5'
23659 3' -58.3 NC_005261.1 + 1176 0.77 0.244852
Target:  5'- gCCCGCGCcgcGGCCGgGGCcgGGGCcgGGCg -3'
miRNA:   3'- -GGGUGCGu--CUGGUgCUG--CCCGuaCCG- -5'
23659 3' -58.3 NC_005261.1 + 1378 0.76 0.29478
Target:  5'- gUCCGCGUcccAGGCCACGcCGGGCGccgcGGCc -3'
miRNA:   3'- -GGGUGCG---UCUGGUGCuGCCCGUa---CCG- -5'
23659 3' -58.3 NC_005261.1 + 1432 0.66 0.841287
Target:  5'- gCCCGCcucCAGcACCAgCGGCGGcGCcucGGCg -3'
miRNA:   3'- -GGGUGc--GUC-UGGU-GCUGCC-CGua-CCG- -5'
23659 3' -58.3 NC_005261.1 + 1484 0.74 0.360011
Target:  5'- gCCGCGCAGaaggccaccGCCGCGGCcGGCAgcucgucgGGCg -3'
miRNA:   3'- gGGUGCGUC---------UGGUGCUGcCCGUa-------CCG- -5'
23659 3' -58.3 NC_005261.1 + 1716 0.71 0.527149
Target:  5'- aCUCGCGCGGcggcacgggcACCGCGgugcGCGGGCccaggcgcGUGGCc -3'
miRNA:   3'- -GGGUGCGUC----------UGGUGC----UGCCCG--------UACCG- -5'
23659 3' -58.3 NC_005261.1 + 1937 0.68 0.685966
Target:  5'- gCCGCggGCAGcACCGCGGCGcGCA-GGUa -3'
miRNA:   3'- gGGUG--CGUC-UGGUGCUGCcCGUaCCG- -5'
23659 3' -58.3 NC_005261.1 + 2371 0.71 0.556373
Target:  5'- gCCACGCGccGCCGCaGCGGcGCGcUGGCg -3'
miRNA:   3'- gGGUGCGUc-UGGUGcUGCC-CGU-ACCG- -5'
23659 3' -58.3 NC_005261.1 + 2409 0.69 0.665072
Target:  5'- gCC-CGCGGGCCccgcgcgGCGGCGGGCcgcgaucucGGCc -3'
miRNA:   3'- gGGuGCGUCUGG-------UGCUGCCCGua-------CCG- -5'
23659 3' -58.3 NC_005261.1 + 2542 0.71 0.566222
Target:  5'- gCCGC-CAGcGCCGCGGCgcuGGGCGcgGGCg -3'
miRNA:   3'- gGGUGcGUC-UGGUGCUG---CCCGUa-CCG- -5'
23659 3' -58.3 NC_005261.1 + 2672 0.73 0.452439
Target:  5'- gCCGCGCuggGGACC-CGGCGGcGCGccGGCu -3'
miRNA:   3'- gGGUGCG---UCUGGuGCUGCC-CGUa-CCG- -5'
23659 3' -58.3 NC_005261.1 + 2747 0.75 0.337194
Target:  5'- gCCGCgGCGGGCCgucGCGGCGGGCcucgaGGCc -3'
miRNA:   3'- gGGUG-CGUCUGG---UGCUGCCCGua---CCG- -5'
23659 3' -58.3 NC_005261.1 + 2796 0.71 0.527149
Target:  5'- gCCGCcgGCGG-CCGgGAgGGGCcgGGCg -3'
miRNA:   3'- gGGUG--CGUCuGGUgCUgCCCGuaCCG- -5'
23659 3' -58.3 NC_005261.1 + 3427 0.74 0.383884
Target:  5'- -gCGCGCGGGCCAgcguccaGGCGGGCGcgcgGGCc -3'
miRNA:   3'- ggGUGCGUCUGGUg------CUGCCCGUa---CCG- -5'
23659 3' -58.3 NC_005261.1 + 3546 0.75 0.337194
Target:  5'- -gCGCGCAG--CGCGGCGGGCGcGGCg -3'
miRNA:   3'- ggGUGCGUCugGUGCUGCCCGUaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.