miRNA display CGI


Results 1 - 20 of 474 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23659 3' -58.3 NC_005261.1 + 138195 0.7 0.616005
Target:  5'- --gGCGCGGGCgGgCGGgGGGCAgGGCg -3'
miRNA:   3'- gggUGCGUCUGgU-GCUgCCCGUaCCG- -5'
23659 3' -58.3 NC_005261.1 + 138125 0.71 0.546574
Target:  5'- --gACGgGGGCCGCGACGgccGGCGggaUGGCg -3'
miRNA:   3'- gggUGCgUCUGGUGCUGC---CCGU---ACCG- -5'
23659 3' -58.3 NC_005261.1 + 138026 0.69 0.626024
Target:  5'- cCCgGCGCGGcCCgGCGGCGguGGCggcgGUGGCg -3'
miRNA:   3'- -GGgUGCGUCuGG-UGCUGC--CCG----UACCG- -5'
23659 3' -58.3 NC_005261.1 + 137903 0.75 0.337194
Target:  5'- cCCCuggugcuCGCGGGCCccGCGAgCGGGCccGGCu -3'
miRNA:   3'- -GGGu------GCGUCUGG--UGCU-GCCCGuaCCG- -5'
23659 3' -58.3 NC_005261.1 + 137710 0.68 0.685966
Target:  5'- cCCCGCGC-GACCcCGGgGGGUGUuuuuugggggggGGCc -3'
miRNA:   3'- -GGGUGCGuCUGGuGCUgCCCGUA------------CCG- -5'
23659 3' -58.3 NC_005261.1 + 136918 0.71 0.517533
Target:  5'- gCCGCGCGG-CCGCGGCGcaUGUGGUg -3'
miRNA:   3'- gGGUGCGUCuGGUGCUGCccGUACCG- -5'
23659 3' -58.3 NC_005261.1 + 136835 0.69 0.653077
Target:  5'- cCCCGCGCGuGAgguagagcaugaacUUGCGGCaGGGCAggaUGGCg -3'
miRNA:   3'- -GGGUGCGU-CU--------------GGUGCUG-CCCGU---ACCG- -5'
23659 3' -58.3 NC_005261.1 + 136438 0.69 0.66607
Target:  5'- cCCCuCGCGGGCguCGcAgGGGCAcgcGGCa -3'
miRNA:   3'- -GGGuGCGUCUGguGC-UgCCCGUa--CCG- -5'
23659 3' -58.3 NC_005261.1 + 135889 0.67 0.772396
Target:  5'- gCCUGCgGCAGcACgACGuGCGGGC-UGGUc -3'
miRNA:   3'- -GGGUG-CGUC-UGgUGC-UGCCCGuACCG- -5'
23659 3' -58.3 NC_005261.1 + 135758 0.67 0.753808
Target:  5'- gCCGCGCGGugCGCucCGGcGCAgaGCg -3'
miRNA:   3'- gGGUGCGUCugGUGcuGCC-CGUacCG- -5'
23659 3' -58.3 NC_005261.1 + 135443 0.66 0.808063
Target:  5'- gCCGCcCAGGCgGCG-CGGGCGcuGCg -3'
miRNA:   3'- gGGUGcGUCUGgUGCuGCCCGUacCG- -5'
23659 3' -58.3 NC_005261.1 + 135180 0.7 0.616005
Target:  5'- gCUCGCuGCGGcUCGCG-CGGaGCAUGGCc -3'
miRNA:   3'- -GGGUG-CGUCuGGUGCuGCC-CGUACCG- -5'
23659 3' -58.3 NC_005261.1 + 135067 0.68 0.715468
Target:  5'- gCCCGcCGCuuuCCgGCGGCGGGCucgcGGCc -3'
miRNA:   3'- -GGGU-GCGucuGG-UGCUGCCCGua--CCG- -5'
23659 3' -58.3 NC_005261.1 + 135021 0.73 0.417304
Target:  5'- cCCgCACGCGG-CCGCGGCGG-CGaGGCc -3'
miRNA:   3'- -GG-GUGCGUCuGGUGCUGCCcGUaCCG- -5'
23659 3' -58.3 NC_005261.1 + 134970 0.68 0.734809
Target:  5'- gCgACGCAGACgGCGAggacgGGGCcgccggGGCg -3'
miRNA:   3'- gGgUGCGUCUGgUGCUg----CCCGua----CCG- -5'
23659 3' -58.3 NC_005261.1 + 134936 0.69 0.676035
Target:  5'- aCCGCGgaGGACgAgcCGAUGGGCGagGGCg -3'
miRNA:   3'- gGGUGCg-UCUGgU--GCUGCCCGUa-CCG- -5'
23659 3' -58.3 NC_005261.1 + 134755 0.76 0.30155
Target:  5'- aCCCGCGac--CCGCGGC-GGCAUGGCg -3'
miRNA:   3'- -GGGUGCgucuGGUGCUGcCCGUACCG- -5'
23659 3' -58.3 NC_005261.1 + 134563 0.69 0.66607
Target:  5'- gCUggGCGGcGCCGCGgcugcgcaggGCGGGCcUGGCg -3'
miRNA:   3'- gGGugCGUC-UGGUGC----------UGCCCGuACCG- -5'
23659 3' -58.3 NC_005261.1 + 134354 0.71 0.527149
Target:  5'- cCCCGCGCc-GCCGCG-CGGGg--GGCg -3'
miRNA:   3'- -GGGUGCGucUGGUGCuGCCCguaCCG- -5'
23659 3' -58.3 NC_005261.1 + 134254 0.66 0.841287
Target:  5'- cCCUGCGCGG-CCGCGuacccgauguACcugaagaucuGGGCGUGGg -3'
miRNA:   3'- -GGGUGCGUCuGGUGC----------UG----------CCCGUACCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.