miRNA display CGI


Results 1 - 20 of 474 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23659 3' -58.3 NC_005261.1 + 50770 0.66 0.808063
Target:  5'- aCCCucaGCGCAcACCGCGGCGGc---GGCc -3'
miRNA:   3'- -GGG---UGCGUcUGGUGCUGCCcguaCCG- -5'
23659 3' -58.3 NC_005261.1 + 14784 0.66 0.808063
Target:  5'- cCCCGCGCAGguGCCGCucccGCaGGC-UGcGCa -3'
miRNA:   3'- -GGGUGCGUC--UGGUGc---UGcCCGuAC-CG- -5'
23659 3' -58.3 NC_005261.1 + 51412 0.66 0.808063
Target:  5'- gCCCGCGCGcccACCGCcuGCuGGGCcccgGGCg -3'
miRNA:   3'- -GGGUGCGUc--UGGUGc-UG-CCCGua--CCG- -5'
23659 3' -58.3 NC_005261.1 + 67159 0.66 0.799356
Target:  5'- aCCCACGCGG-CgGCGGCGucaCAcGGCc -3'
miRNA:   3'- -GGGUGCGUCuGgUGCUGCcc-GUaCCG- -5'
23659 3' -58.3 NC_005261.1 + 21786 0.66 0.808063
Target:  5'- gCgGCGCGGGCCGCcGCagccgccGGCcgGGCc -3'
miRNA:   3'- gGgUGCGUCUGGUGcUGc------CCGuaCCG- -5'
23659 3' -58.3 NC_005261.1 + 86049 0.66 0.799356
Target:  5'- -gCACGUucuCCACGGCGGcGCgguacGUGGCc -3'
miRNA:   3'- ggGUGCGucuGGUGCUGCC-CG-----UACCG- -5'
23659 3' -58.3 NC_005261.1 + 65303 0.66 0.799356
Target:  5'- gCCGCGCccAUCGCGAaaguccacCGGGCAcagcGGCa -3'
miRNA:   3'- gGGUGCGucUGGUGCU--------GCCCGUa---CCG- -5'
23659 3' -58.3 NC_005261.1 + 114326 0.66 0.799356
Target:  5'- uCCgGCGCaagguGGACUggcuCGAgCGGcGCGUGGCc -3'
miRNA:   3'- -GGgUGCG-----UCUGGu---GCU-GCC-CGUACCG- -5'
23659 3' -58.3 NC_005261.1 + 70518 0.66 0.799356
Target:  5'- gCCACGgGGacgaucGCCACGGCGGcGCccGcGCc -3'
miRNA:   3'- gGGUGCgUC------UGGUGCUGCC-CGuaC-CG- -5'
23659 3' -58.3 NC_005261.1 + 44285 0.66 0.799356
Target:  5'- gCCCGC-C--GCCAgCGGCGGGCcagGGCc -3'
miRNA:   3'- -GGGUGcGucUGGU-GCUGCCCGua-CCG- -5'
23659 3' -58.3 NC_005261.1 + 110245 0.66 0.808063
Target:  5'- gCgGCGCGGcGCC-CGGgGGGCugcgGGCc -3'
miRNA:   3'- gGgUGCGUC-UGGuGCUgCCCGua--CCG- -5'
23659 3' -58.3 NC_005261.1 + 133379 0.66 0.808063
Target:  5'- gCCUGCGCGcGGCC-C-ACGGGCGcgcGGCc -3'
miRNA:   3'- -GGGUGCGU-CUGGuGcUGCCCGUa--CCG- -5'
23659 3' -58.3 NC_005261.1 + 49160 0.66 0.799356
Target:  5'- gUCCGCaaagGCGG-CCACGGCGGGgugcucGGCc -3'
miRNA:   3'- -GGGUG----CGUCuGGUGCUGCCCgua---CCG- -5'
23659 3' -58.3 NC_005261.1 + 52968 0.66 0.841287
Target:  5'- gCCGCGcCGGugCGgcgcCGGCaGGCGggGGCg -3'
miRNA:   3'- gGGUGC-GUCugGU----GCUGcCCGUa-CCG- -5'
23659 3' -58.3 NC_005261.1 + 82917 0.66 0.799356
Target:  5'- aUCCAgaacugcagcuCGCuGACCGCGuaaagccagcGCGGcGCcgGGCg -3'
miRNA:   3'- -GGGU-----------GCGuCUGGUGC----------UGCC-CGuaCCG- -5'
23659 3' -58.3 NC_005261.1 + 135443 0.66 0.808063
Target:  5'- gCCGCcCAGGCgGCG-CGGGCGcuGCg -3'
miRNA:   3'- gGGUGcGUCUGgUGCuGCCCGUacCG- -5'
23659 3' -58.3 NC_005261.1 + 49105 0.66 0.808063
Target:  5'- gCgCGCGCAgcagcuccucGAgCGCGGCGGGCG-GGa -3'
miRNA:   3'- -GgGUGCGU----------CUgGUGCUGCCCGUaCCg -5'
23659 3' -58.3 NC_005261.1 + 56992 0.66 0.808063
Target:  5'- -gCGCGUGGACCACGucaaGGGgGaGGUg -3'
miRNA:   3'- ggGUGCGUCUGGUGCug--CCCgUaCCG- -5'
23659 3' -58.3 NC_005261.1 + 70811 0.66 0.799356
Target:  5'- gUCCGCGCcGGCgGCccCGGGCGcgccGGCg -3'
miRNA:   3'- -GGGUGCGuCUGgUGcuGCCCGUa---CCG- -5'
23659 3' -58.3 NC_005261.1 + 45708 0.66 0.799356
Target:  5'- gCCGCGCAGGgguuCCGCGACGcaguGUAccacUGGUg -3'
miRNA:   3'- gGGUGCGUCU----GGUGCUGCc---CGU----ACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.