miRNA display CGI


Results 21 - 40 of 474 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23659 3' -58.3 NC_005261.1 + 89972 0.66 0.816617
Target:  5'- gCCGCGC--GCCAucuuUGACGGGCA--GCa -3'
miRNA:   3'- gGGUGCGucUGGU----GCUGCCCGUacCG- -5'
23659 3' -58.3 NC_005261.1 + 68030 0.66 0.808063
Target:  5'- cCCCGcCGCGGGggacgUCGCGuacuuugucuacGCGGGCAcGGUg -3'
miRNA:   3'- -GGGU-GCGUCU-----GGUGC------------UGCCCGUaCCG- -5'
23659 3' -58.3 NC_005261.1 + 65303 0.66 0.799356
Target:  5'- gCCGCGCccAUCGCGAaaguccacCGGGCAcagcGGCa -3'
miRNA:   3'- gGGUGCGucUGGUGCU--------GCCCGUa---CCG- -5'
23659 3' -58.3 NC_005261.1 + 56144 0.66 0.808063
Target:  5'- --gGCGCGGGCCGaggGugGcGGCAgcGGCg -3'
miRNA:   3'- gggUGCGUCUGGUg--CugC-CCGUa-CCG- -5'
23659 3' -58.3 NC_005261.1 + 114275 0.66 0.808063
Target:  5'- -aCGCGguGGCgCGCG-CGGGCuacGUGGa -3'
miRNA:   3'- ggGUGCguCUG-GUGCuGCCCG---UACCg -5'
23659 3' -58.3 NC_005261.1 + 117717 0.66 0.816617
Target:  5'- -gCGCGCGGGCCcgcaaGCGGCcGcGCGcUGGCg -3'
miRNA:   3'- ggGUGCGUCUGG-----UGCUGcC-CGU-ACCG- -5'
23659 3' -58.3 NC_005261.1 + 135443 0.66 0.808063
Target:  5'- gCCGCcCAGGCgGCG-CGGGCGcuGCg -3'
miRNA:   3'- gGGUGcGUCUGgUGCuGCCCGUacCG- -5'
23659 3' -58.3 NC_005261.1 + 81418 0.66 0.805467
Target:  5'- cCCCAgGCAcaggcggcgucgucGGCCgccccGCGGCGGGCGccGCc -3'
miRNA:   3'- -GGGUgCGU--------------CUGG-----UGCUGCCCGUacCG- -5'
23659 3' -58.3 NC_005261.1 + 70471 0.66 0.808063
Target:  5'- gCCCGCGCcgcgGGugCGCGcGCGuGaGCAcguagcUGGCg -3'
miRNA:   3'- -GGGUGCG----UCugGUGC-UGC-C-CGU------ACCG- -5'
23659 3' -58.3 NC_005261.1 + 72443 0.66 0.825011
Target:  5'- cCCCG-GCGGGggcgcCCGCGGCGaGCGcGGCg -3'
miRNA:   3'- -GGGUgCGUCU-----GGUGCUGCcCGUaCCG- -5'
23659 3' -58.3 NC_005261.1 + 73209 0.66 0.808063
Target:  5'- cCCCGgGC--GCCuCGAgGGGCgcgGUGGCc -3'
miRNA:   3'- -GGGUgCGucUGGuGCUgCCCG---UACCG- -5'
23659 3' -58.3 NC_005261.1 + 44285 0.66 0.799356
Target:  5'- gCCCGC-C--GCCAgCGGCGGGCcagGGCc -3'
miRNA:   3'- -GGGUGcGucUGGU-GCUGCCCGua-CCG- -5'
23659 3' -58.3 NC_005261.1 + 30409 0.66 0.825011
Target:  5'- -aCAUGCGGGCCGgGgcaccGCGGGCGgaccUGGa -3'
miRNA:   3'- ggGUGCGUCUGGUgC-----UGCCCGU----ACCg -5'
23659 3' -58.3 NC_005261.1 + 89258 0.66 0.816617
Target:  5'- gCCUGuCGU-GugCggGCGACGGGC-UGGCg -3'
miRNA:   3'- -GGGU-GCGuCugG--UGCUGCCCGuACCG- -5'
23659 3' -58.3 NC_005261.1 + 110245 0.66 0.808063
Target:  5'- gCgGCGCGGcGCC-CGGgGGGCugcgGGCc -3'
miRNA:   3'- gGgUGCGUC-UGGuGCUgCCCGua--CCG- -5'
23659 3' -58.3 NC_005261.1 + 50770 0.66 0.808063
Target:  5'- aCCCucaGCGCAcACCGCGGCGGc---GGCc -3'
miRNA:   3'- -GGG---UGCGUcUGGUGCUGCCcguaCCG- -5'
23659 3' -58.3 NC_005261.1 + 88273 0.66 0.816617
Target:  5'- gCCGCGCugccuGGACgACGACGGc---GGCg -3'
miRNA:   3'- gGGUGCG-----UCUGgUGCUGCCcguaCCG- -5'
23659 3' -58.3 NC_005261.1 + 86049 0.66 0.799356
Target:  5'- -gCACGUucuCCACGGCGGcGCgguacGUGGCc -3'
miRNA:   3'- ggGUGCGucuGGUGCUGCC-CG-----UACCG- -5'
23659 3' -58.3 NC_005261.1 + 131993 0.66 0.815769
Target:  5'- gCCUucgcaguCGCGGACgGCGACaacuGGGCcgccgucacggacGUGGCc -3'
miRNA:   3'- -GGGu------GCGUCUGgUGCUG----CCCG-------------UACCG- -5'
23659 3' -58.3 NC_005261.1 + 21786 0.66 0.808063
Target:  5'- gCgGCGCGGGCCGCcGCagccgccGGCcgGGCc -3'
miRNA:   3'- gGgUGCGUCUGGUGcUGc------CCGuaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.