miRNA display CGI


Results 21 - 40 of 474 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23659 3' -58.3 NC_005261.1 + 3665 0.77 0.256637
Target:  5'- --aGCGCAGGCCGCGGCcGGCA-GGCc -3'
miRNA:   3'- gggUGCGUCUGGUGCUGcCCGUaCCG- -5'
23659 3' -58.3 NC_005261.1 + 3805 0.76 0.280948
Target:  5'- gCUCGCGCAGccgcucgcgcgcuGCCGCGGgccCGGGCGcUGGCg -3'
miRNA:   3'- -GGGUGCGUC-------------UGGUGCU---GCCCGU-ACCG- -5'
23659 3' -58.3 NC_005261.1 + 3864 0.67 0.781514
Target:  5'- gCCGCGCGgccggcGAgCACGGCGcGCAgcucGGCg -3'
miRNA:   3'- gGGUGCGU------CUgGUGCUGCcCGUa---CCG- -5'
23659 3' -58.3 NC_005261.1 + 4019 0.72 0.470602
Target:  5'- gCCACGCAGGCCGCcACGuGC--GGCa -3'
miRNA:   3'- gGGUGCGUCUGGUGcUGCcCGuaCCG- -5'
23659 3' -58.3 NC_005261.1 + 4058 0.67 0.781514
Target:  5'- uUCUGCGCGG-CCAUGGCGuccccgaccggcGGCAgcGGCg -3'
miRNA:   3'- -GGGUGCGUCuGGUGCUGC------------CCGUa-CCG- -5'
23659 3' -58.3 NC_005261.1 + 4375 0.7 0.605998
Target:  5'- gCCCGCGCc-GCCgaaGCGcACGcGGCcgGGCg -3'
miRNA:   3'- -GGGUGCGucUGG---UGC-UGC-CCGuaCCG- -5'
23659 3' -58.3 NC_005261.1 + 4477 0.67 0.790503
Target:  5'- gUCGCGCGGcGCCGCGGCGuagccuGCGcgGGCc -3'
miRNA:   3'- gGGUGCGUC-UGGUGCUGCc-----CGUa-CCG- -5'
23659 3' -58.3 NC_005261.1 + 4521 0.81 0.146555
Target:  5'- gCCCGCGCGGgcGCCGCGGCgaGGGCGccgGGCc -3'
miRNA:   3'- -GGGUGCGUC--UGGUGCUG--CCCGUa--CCG- -5'
23659 3' -58.3 NC_005261.1 + 4558 0.73 0.443502
Target:  5'- gCCUugGCuGGAuCCGCgGGCGGGUccGGCg -3'
miRNA:   3'- -GGGugCG-UCU-GGUG-CUGCCCGuaCCG- -5'
23659 3' -58.3 NC_005261.1 + 4955 0.67 0.744356
Target:  5'- gCCCAgGCGcccccGGCCGCGGCguccucugGGGCccggagGGCg -3'
miRNA:   3'- -GGGUgCGU-----CUGGUGCUG--------CCCGua----CCG- -5'
23659 3' -58.3 NC_005261.1 + 5158 0.73 0.443502
Target:  5'- gCCCG-GCGGGCCGCGucgagcaGGGCcgGGUc -3'
miRNA:   3'- -GGGUgCGUCUGGUGCug-----CCCGuaCCG- -5'
23659 3' -58.3 NC_005261.1 + 6407 0.67 0.781514
Target:  5'- aCCCGCGCGcguuGGCC-CGGCcugcucgcgaGGGCGguccgggGGCc -3'
miRNA:   3'- -GGGUGCGU----CUGGuGCUG----------CCCGUa------CCG- -5'
23659 3' -58.3 NC_005261.1 + 9604 0.69 0.656078
Target:  5'- cCCCGCcuCGGGCC-CGGggUGGGCA-GGCg -3'
miRNA:   3'- -GGGUGc-GUCUGGuGCU--GCCCGUaCCG- -5'
23659 3' -58.3 NC_005261.1 + 10241 0.81 0.135873
Target:  5'- gCCCGCGCAcucGCCGCcGCGGGCcUGGCg -3'
miRNA:   3'- -GGGUGCGUc--UGGUGcUGCCCGuACCG- -5'
23659 3' -58.3 NC_005261.1 + 10506 0.69 0.636048
Target:  5'- -gCGCGCGGccGCCGCuGCGGGCcccgcGGCg -3'
miRNA:   3'- ggGUGCGUC--UGGUGcUGCCCGua---CCG- -5'
23659 3' -58.3 NC_005261.1 + 11893 0.71 0.566222
Target:  5'- cCCgCACGCGcGcCCGCcGCGGGCccGGCc -3'
miRNA:   3'- -GG-GUGCGU-CuGGUGcUGCCCGuaCCG- -5'
23659 3' -58.3 NC_005261.1 + 12292 0.69 0.636048
Target:  5'- gUCCGCGU---CCGCcGCGGGCAcgGGCg -3'
miRNA:   3'- -GGGUGCGucuGGUGcUGCCCGUa-CCG- -5'
23659 3' -58.3 NC_005261.1 + 12341 0.7 0.586046
Target:  5'- gCCgGCGCGGccgccGCCGCGGCG-GCAaccGGCg -3'
miRNA:   3'- -GGgUGCGUC-----UGGUGCUGCcCGUa--CCG- -5'
23659 3' -58.3 NC_005261.1 + 12550 0.68 0.725177
Target:  5'- -aUACGCGGGggccCCGCGcCGGGCAacgcggGGCc -3'
miRNA:   3'- ggGUGCGUCU----GGUGCuGCCCGUa-----CCG- -5'
23659 3' -58.3 NC_005261.1 + 12733 0.75 0.344681
Target:  5'- gCCCGC-CGGcccCCugGGCGGGCccGGCg -3'
miRNA:   3'- -GGGUGcGUCu--GGugCUGCCCGuaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.