miRNA display CGI


Results 1 - 20 of 474 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23659 3' -58.3 NC_005261.1 + 52968 0.66 0.841287
Target:  5'- gCCGCGcCGGugCGgcgcCGGCaGGCGggGGCg -3'
miRNA:   3'- gGGUGC-GUCugGU----GCUGcCCGUa-CCG- -5'
23659 3' -58.3 NC_005261.1 + 48090 0.79 0.187423
Target:  5'- aCCC-CGCAGAUgcagccggugcugUACGAgaCGGGCAUGGCg -3'
miRNA:   3'- -GGGuGCGUCUG-------------GUGCU--GCCCGUACCG- -5'
23659 3' -58.3 NC_005261.1 + 77667 0.79 0.197293
Target:  5'- gCCUgcagGCGCAGGgCGCgGACGGGCcgGGCu -3'
miRNA:   3'- -GGG----UGCGUCUgGUG-CUGCCCGuaCCG- -5'
23659 3' -58.3 NC_005261.1 + 83838 0.79 0.202151
Target:  5'- uCCgCugGCGGGCCGCGGCcccgcugggcuGGGCcgGGCc -3'
miRNA:   3'- -GG-GugCGUCUGGUGCUG-----------CCCGuaCCG- -5'
23659 3' -58.3 NC_005261.1 + 21821 0.79 0.202151
Target:  5'- gCCCGCgGCGGGCgCGCGuGCGGGCG-GGCu -3'
miRNA:   3'- -GGGUG-CGUCUG-GUGC-UGCCCGUaCCG- -5'
23659 3' -58.3 NC_005261.1 + 29204 0.79 0.202151
Target:  5'- gCCCGCGCGGGCgCGCGACugGGGCccGcGCa -3'
miRNA:   3'- -GGGUGCGUCUG-GUGCUG--CCCGuaC-CG- -5'
23659 3' -58.3 NC_005261.1 + 104844 0.79 0.207113
Target:  5'- gCCACGCGGACCGCG-CGGGUcacGCa -3'
miRNA:   3'- gGGUGCGUCUGGUGCuGCCCGuacCG- -5'
23659 3' -58.3 NC_005261.1 + 127331 0.78 0.212179
Target:  5'- gCCCGCGgGGGCCggaGCGGCGGggcgcugggcccGCGUGGCu -3'
miRNA:   3'- -GGGUGCgUCUGG---UGCUGCC------------CGUACCG- -5'
23659 3' -58.3 NC_005261.1 + 118660 0.78 0.217352
Target:  5'- gCCGCGCgcucgGGGCUgaggGCGGCGGGCGcUGGCg -3'
miRNA:   3'- gGGUGCG-----UCUGG----UGCUGCCCGU-ACCG- -5'
23659 3' -58.3 NC_005261.1 + 74906 0.79 0.183327
Target:  5'- gCCCGCGCuGGCCGCG-CGGGgGagGGCg -3'
miRNA:   3'- -GGGUGCGuCUGGUGCuGCCCgUa-CCG- -5'
23659 3' -58.3 NC_005261.1 + 74269 0.79 0.183327
Target:  5'- gCgCGCGCGcGuCCGCGGCGGGCggGGCg -3'
miRNA:   3'- -GgGUGCGU-CuGGUGCUGCCCGuaCCG- -5'
23659 3' -58.3 NC_005261.1 + 123093 0.8 0.170242
Target:  5'- gCCACGCcauuucGCCGCGGCGGGaaaGUGGCg -3'
miRNA:   3'- gGGUGCGuc----UGGUGCUGCCCg--UACCG- -5'
23659 3' -58.3 NC_005261.1 + 113028 0.85 0.077059
Target:  5'- cCCCACagaGCGGGCCGCG-CGcGGCGUGGCg -3'
miRNA:   3'- -GGGUG---CGUCUGGUGCuGC-CCGUACCG- -5'
23659 3' -58.3 NC_005261.1 + 28431 0.83 0.116629
Target:  5'- aCCCGCGCGcACCGCGGCcGGCcAUGGCg -3'
miRNA:   3'- -GGGUGCGUcUGGUGCUGcCCG-UACCG- -5'
23659 3' -58.3 NC_005261.1 + 95656 0.82 0.11965
Target:  5'- -aCGCGCGGcGCCGCGACGGGCGcgGGUg -3'
miRNA:   3'- ggGUGCGUC-UGGUGCUGCCCGUa-CCG- -5'
23659 3' -58.3 NC_005261.1 + 10241 0.81 0.135873
Target:  5'- gCCCGCGCAcucGCCGCcGCGGGCcUGGCg -3'
miRNA:   3'- -GGGUGCGUc--UGGUGcUGCCCGuACCG- -5'
23659 3' -58.3 NC_005261.1 + 107509 0.81 0.146555
Target:  5'- gCCACGCAGGCCGCGccgaaGGGCAgcgcgucGGCg -3'
miRNA:   3'- gGGUGCGUCUGGUGCug---CCCGUa------CCG- -5'
23659 3' -58.3 NC_005261.1 + 4521 0.81 0.146555
Target:  5'- gCCCGCGCGGgcGCCGCGGCgaGGGCGccgGGCc -3'
miRNA:   3'- -GGGUGCGUC--UGGUGCUG--CCCGUa--CCG- -5'
23659 3' -58.3 NC_005261.1 + 68123 0.81 0.146555
Target:  5'- gCUGCGCGGGCCGCGGCGcGGCgaccgcgccGUGGCc -3'
miRNA:   3'- gGGUGCGUCUGGUGCUGC-CCG---------UACCG- -5'
23659 3' -58.3 NC_005261.1 + 71051 0.8 0.157998
Target:  5'- aCCACGCcguGGGCCagccgccgcGCGGCGGGCggGGCg -3'
miRNA:   3'- gGGUGCG---UCUGG---------UGCUGCCCGuaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.