miRNA display CGI


Results 41 - 60 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23659 5' -57 NC_005261.1 + 104713 0.68 0.738587
Target:  5'- -gGCUGgacgGCCGAGggcgCGUcGUGCCGCGUg -3'
miRNA:   3'- caUGACg---CGGCUUa---GCA-CGCGGCGUA- -5'
23659 5' -57 NC_005261.1 + 118908 0.68 0.738587
Target:  5'- --cCUGCGuCUGggUcCG-GCGCCGCGg -3'
miRNA:   3'- cauGACGC-GGCuuA-GCaCGCGGCGUa -5'
23659 5' -57 NC_005261.1 + 120356 0.68 0.738587
Target:  5'- --cCUGCGCUGGA-CGgugcgcgacgGCGCCGCGc -3'
miRNA:   3'- cauGACGCGGCUUaGCa---------CGCGGCGUa -5'
23659 5' -57 NC_005261.1 + 120958 0.68 0.728657
Target:  5'- -gGCUcGCGCCccgcggGGcgCGUGcCGCCGCAg -3'
miRNA:   3'- caUGA-CGCGG------CUuaGCAC-GCGGCGUa -5'
23659 5' -57 NC_005261.1 + 59002 0.68 0.728657
Target:  5'- -cGgUGCGCCGGGcUCGcccagcgGCGCCGCc- -3'
miRNA:   3'- caUgACGCGGCUU-AGCa------CGCGGCGua -5'
23659 5' -57 NC_005261.1 + 120225 0.68 0.718641
Target:  5'- -cAgaGCGCCGAcgUGgaGCGCCGCu- -3'
miRNA:   3'- caUgaCGCGGCUuaGCa-CGCGGCGua -5'
23659 5' -57 NC_005261.1 + 102466 0.68 0.718641
Target:  5'- -cGCgcagGCGCCGGAccuccUCGgcGCGCCGCc- -3'
miRNA:   3'- caUGa---CGCGGCUU-----AGCa-CGCGGCGua -5'
23659 5' -57 NC_005261.1 + 59477 0.68 0.70855
Target:  5'- -gGCaGCGCCGGcgCG-GcCGCCGCGc -3'
miRNA:   3'- caUGaCGCGGCUuaGCaC-GCGGCGUa -5'
23659 5' -57 NC_005261.1 + 131430 0.68 0.70855
Target:  5'- -aGCgGCGCCGGcgCcccccuUGCGCCGCGc -3'
miRNA:   3'- caUGaCGCGGCUuaGc-----ACGCGGCGUa -5'
23659 5' -57 NC_005261.1 + 47261 0.68 0.70855
Target:  5'- --cCUGCGCCGGcccgccggCGaagaGCGCCGCGUg -3'
miRNA:   3'- cauGACGCGGCUua------GCa---CGCGGCGUA- -5'
23659 5' -57 NC_005261.1 + 130733 0.68 0.70855
Target:  5'- -cGCUGcCGCCGAcaugAUCGccGCGCUGCu- -3'
miRNA:   3'- caUGAC-GCGGCU----UAGCa-CGCGGCGua -5'
23659 5' -57 NC_005261.1 + 93930 0.68 0.688177
Target:  5'- -gGCuUGCGCCGuccgCGgGCGCCGCc- -3'
miRNA:   3'- caUG-ACGCGGCuua-GCaCGCGGCGua -5'
23659 5' -57 NC_005261.1 + 122688 0.68 0.688177
Target:  5'- -aGCUGCGCCugcuccAUCGccGCGCCGCc- -3'
miRNA:   3'- caUGACGCGGcu----UAGCa-CGCGGCGua -5'
23659 5' -57 NC_005261.1 + 83688 0.69 0.677915
Target:  5'- -aGCgcgcCGCCGAggCG-GCGCCGCAg -3'
miRNA:   3'- caUGac--GCGGCUuaGCaCGCGGCGUa -5'
23659 5' -57 NC_005261.1 + 132628 0.69 0.677915
Target:  5'- -cGCUgGCGCCGAGgacgCGgGCGCgGCGg -3'
miRNA:   3'- caUGA-CGCGGCUUa---GCaCGCGgCGUa -5'
23659 5' -57 NC_005261.1 + 51474 0.69 0.677915
Target:  5'- cUGCUgGCGCUGAucacCG-GCGCCGCGc -3'
miRNA:   3'- cAUGA-CGCGGCUua--GCaCGCGGCGUa -5'
23659 5' -57 NC_005261.1 + 104160 0.69 0.657283
Target:  5'- -cACcGCGCCGuccgCGgGCGCCGCGc -3'
miRNA:   3'- caUGaCGCGGCuua-GCaCGCGGCGUa -5'
23659 5' -57 NC_005261.1 + 21751 0.69 0.636568
Target:  5'- cUGCUGCGCCuGGAgCGcGCGCCGgGc -3'
miRNA:   3'- cAUGACGCGG-CUUaGCaCGCGGCgUa -5'
23659 5' -57 NC_005261.1 + 106693 0.7 0.626201
Target:  5'- -gGCcGCGCCGAucgCGUcccaGCGCUGCAg -3'
miRNA:   3'- caUGaCGCGGCUua-GCA----CGCGGCGUa -5'
23659 5' -57 NC_005261.1 + 64049 0.7 0.626201
Target:  5'- --uCUGCGCCGcGUgGUGCGCCa--- -3'
miRNA:   3'- cauGACGCGGCuUAgCACGCGGcgua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.