miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23659 5' -57 NC_005261.1 + 61118 0.66 0.813801
Target:  5'- -cGCUGCGCCG-----UGCGCUGCu- -3'
miRNA:   3'- caUGACGCGGCuuagcACGCGGCGua -5'
23659 5' -57 NC_005261.1 + 33370 0.66 0.813801
Target:  5'- -gGCcGCGCCGGGcugCGgGcCGCCGCAg -3'
miRNA:   3'- caUGaCGCGGCUUa--GCaC-GCGGCGUa -5'
23659 5' -57 NC_005261.1 + 117632 0.66 0.804897
Target:  5'- -gACcGCGCCGGG-CccGCGCCGCGc -3'
miRNA:   3'- caUGaCGCGGCUUaGcaCGCGGCGUa -5'
23659 5' -57 NC_005261.1 + 86593 0.67 0.795833
Target:  5'- -gGCgGCGCCGuccuuggcGUCGgccGCGCCGCc- -3'
miRNA:   3'- caUGaCGCGGCu-------UAGCa--CGCGGCGua -5'
23659 5' -57 NC_005261.1 + 108744 0.67 0.794918
Target:  5'- -gGCgGCGCCGcggCGUccgcggcGCGCCGCGc -3'
miRNA:   3'- caUGaCGCGGCuuaGCA-------CGCGGCGUa -5'
23659 5' -57 NC_005261.1 + 60167 0.67 0.786617
Target:  5'- -cGCUGcCGUgGAAgcgCGUcuGCGCCGCGg -3'
miRNA:   3'- caUGAC-GCGgCUUa--GCA--CGCGGCGUa -5'
23659 5' -57 NC_005261.1 + 77550 0.67 0.786617
Target:  5'- gGUACgGCGCCGccgccaGUgGCGCCGCc- -3'
miRNA:   3'- -CAUGaCGCGGCuuag--CA-CGCGGCGua -5'
23659 5' -57 NC_005261.1 + 94629 0.67 0.777259
Target:  5'- -cGCcgGCGCCGucGUCG-GCGCgCGCGa -3'
miRNA:   3'- caUGa-CGCGGCu-UAGCaCGCG-GCGUa -5'
23659 5' -57 NC_005261.1 + 102284 0.67 0.777259
Target:  5'- cUGCcGCGCCagcggccgcGggUCGUagccgcGCGCCGCGg -3'
miRNA:   3'- cAUGaCGCGG---------CuuAGCA------CGCGGCGUa -5'
23659 5' -57 NC_005261.1 + 91099 0.67 0.777259
Target:  5'- cGUGCUcaugcacgacGaCGCCGucUCGcGCGCCGCGg -3'
miRNA:   3'- -CAUGA----------C-GCGGCuuAGCaCGCGGCGUa -5'
23659 5' -57 NC_005261.1 + 71210 0.67 0.767767
Target:  5'- -aGCUGCGC--GAUgGUGCGCgCGCGc -3'
miRNA:   3'- caUGACGCGgcUUAgCACGCG-GCGUa -5'
23659 5' -57 NC_005261.1 + 44869 0.67 0.767767
Target:  5'- -aAgaGCGCCGccgCGaGCGCCGCGg -3'
miRNA:   3'- caUgaCGCGGCuuaGCaCGCGGCGUa -5'
23659 5' -57 NC_005261.1 + 85233 0.67 0.758151
Target:  5'- -aGCcGCGCCGGcAUCugguUGCGCUGCAg -3'
miRNA:   3'- caUGaCGCGGCU-UAGc---ACGCGGCGUa -5'
23659 5' -57 NC_005261.1 + 90111 0.67 0.748421
Target:  5'- -gGCUGgGCCGAcgCG-GC-CCGCGg -3'
miRNA:   3'- caUGACgCGGCUuaGCaCGcGGCGUa -5'
23659 5' -57 NC_005261.1 + 65661 0.67 0.748421
Target:  5'- -cGC-GCGCCGGcgCGcaGCGCCGCc- -3'
miRNA:   3'- caUGaCGCGGCUuaGCa-CGCGGCGua -5'
23659 5' -57 NC_005261.1 + 34362 0.67 0.748421
Target:  5'- -gGCcggGCGCCGcg-CG-GCGCCGCGc -3'
miRNA:   3'- caUGa--CGCGGCuuaGCaCGCGGCGUa -5'
23659 5' -57 NC_005261.1 + 102949 0.68 0.738587
Target:  5'- -cGCUGCGgCGGcggccgCGgGCGCCGCGg -3'
miRNA:   3'- caUGACGCgGCUua----GCaCGCGGCGUa -5'
23659 5' -57 NC_005261.1 + 101632 0.68 0.738587
Target:  5'- ----cGCGCCGcggccgCGUcGCGCCGCAc -3'
miRNA:   3'- caugaCGCGGCuua---GCA-CGCGGCGUa -5'
23659 5' -57 NC_005261.1 + 30181 0.68 0.738587
Target:  5'- -cGCUgcGCGCCGAggCG-GcCGCCGCGc -3'
miRNA:   3'- caUGA--CGCGGCUuaGCaC-GCGGCGUa -5'
23659 5' -57 NC_005261.1 + 120356 0.68 0.738587
Target:  5'- --cCUGCGCUGGA-CGgugcgcgacgGCGCCGCGc -3'
miRNA:   3'- cauGACGCGGCUUaGCa---------CGCGGCGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.