miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23659 5' -57 NC_005261.1 + 59002 0.68 0.728657
Target:  5'- -cGgUGCGCCGGGcUCGcccagcgGCGCCGCc- -3'
miRNA:   3'- caUgACGCGGCUU-AGCa------CGCGGCGua -5'
23659 5' -57 NC_005261.1 + 59477 0.68 0.70855
Target:  5'- -gGCaGCGCCGGcgCG-GcCGCCGCGc -3'
miRNA:   3'- caUGaCGCGGCUuaGCaC-GCGGCGUa -5'
23659 5' -57 NC_005261.1 + 59665 0.7 0.59516
Target:  5'- -gACUGCgGCCGggUCGUcgaaGCCGCc- -3'
miRNA:   3'- caUGACG-CGGCuuAGCAcg--CGGCGua -5'
23659 5' -57 NC_005261.1 + 59801 0.66 0.822535
Target:  5'- -gGCgGCagGCCGGcgUG-GCGCCGCGUg -3'
miRNA:   3'- caUGaCG--CGGCUuaGCaCGCGGCGUA- -5'
23659 5' -57 NC_005261.1 + 60167 0.67 0.786617
Target:  5'- -cGCUGcCGUgGAAgcgCGUcuGCGCCGCGg -3'
miRNA:   3'- caUGAC-GCGgCUUa--GCA--CGCGGCGUa -5'
23659 5' -57 NC_005261.1 + 61118 0.66 0.813801
Target:  5'- -cGCUGCGCCG-----UGCGCUGCu- -3'
miRNA:   3'- caUGACGCGGCuuagcACGCGGCGua -5'
23659 5' -57 NC_005261.1 + 64049 0.7 0.626201
Target:  5'- --uCUGCGCCGcGUgGUGCGCCa--- -3'
miRNA:   3'- cauGACGCGGCuUAgCACGCGGcgua -5'
23659 5' -57 NC_005261.1 + 64283 0.66 0.831092
Target:  5'- gGUGCaGCGCCGcguccagCGUGCGCauguuuCGCGUc -3'
miRNA:   3'- -CAUGaCGCGGCuua----GCACGCG------GCGUA- -5'
23659 5' -57 NC_005261.1 + 64829 0.7 0.574592
Target:  5'- -cGC-GCGCCGggUcCGcGCGCUGCAg -3'
miRNA:   3'- caUGaCGCGGCuuA-GCaCGCGGCGUa -5'
23659 5' -57 NC_005261.1 + 65661 0.67 0.748421
Target:  5'- -cGC-GCGCCGGcgCGcaGCGCCGCc- -3'
miRNA:   3'- caUGaCGCGGCUuaGCa-CGCGGCGua -5'
23659 5' -57 NC_005261.1 + 68878 0.74 0.368584
Target:  5'- ---gUGCGCCG--UCGUGCGCUGCGc -3'
miRNA:   3'- caugACGCGGCuuAGCACGCGGCGUa -5'
23659 5' -57 NC_005261.1 + 70646 0.72 0.456359
Target:  5'- -cGCgGCGCUGAGguUCG-GCGCCGCGg -3'
miRNA:   3'- caUGaCGCGGCUU--AGCaCGCGGCGUa -5'
23659 5' -57 NC_005261.1 + 71210 0.67 0.767767
Target:  5'- -aGCUGCGC--GAUgGUGCGCgCGCGc -3'
miRNA:   3'- caUGACGCGgcUUAgCACGCG-GCGUa -5'
23659 5' -57 NC_005261.1 + 72496 0.66 0.813801
Target:  5'- -aGgaGCGCCGcgcgaagCGgGCGCCGCAUc -3'
miRNA:   3'- caUgaCGCGGCuua----GCaCGCGGCGUA- -5'
23659 5' -57 NC_005261.1 + 76084 0.66 0.839463
Target:  5'- cUGCUGCGCC---UCGUgGCGCUGgAg -3'
miRNA:   3'- cAUGACGCGGcuuAGCA-CGCGGCgUa -5'
23659 5' -57 NC_005261.1 + 77550 0.67 0.786617
Target:  5'- gGUACgGCGCCGccgccaGUgGCGCCGCc- -3'
miRNA:   3'- -CAUGaCGCGGCuuag--CA-CGCGGCGua -5'
23659 5' -57 NC_005261.1 + 82065 0.66 0.831092
Target:  5'- ----cGuCGCCGggUCGacggcGUGCCGCAg -3'
miRNA:   3'- caugaC-GCGGCuuAGCa----CGCGGCGUa -5'
23659 5' -57 NC_005261.1 + 83301 0.72 0.465747
Target:  5'- -gGCUGCGCgGggUCGUGCaGCUcggGCGg -3'
miRNA:   3'- caUGACGCGgCuuAGCACG-CGG---CGUa -5'
23659 5' -57 NC_005261.1 + 83688 0.69 0.677915
Target:  5'- -aGCgcgcCGCCGAggCG-GCGCCGCAg -3'
miRNA:   3'- caUGac--GCGGCUuaGCaCGCGGCGUa -5'
23659 5' -57 NC_005261.1 + 85233 0.67 0.758151
Target:  5'- -aGCcGCGCCGGcAUCugguUGCGCUGCAg -3'
miRNA:   3'- caUGaCGCGGCU-UAGc---ACGCGGCGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.