Results 21 - 40 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23659 | 5' | -57 | NC_005261.1 | + | 64049 | 0.7 | 0.626201 |
Target: 5'- --uCUGCGCCGcGUgGUGCGCCa--- -3' miRNA: 3'- cauGACGCGGCuUAgCACGCGGcgua -5' |
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23659 | 5' | -57 | NC_005261.1 | + | 21751 | 0.69 | 0.636568 |
Target: 5'- cUGCUGCGCCuGGAgCGcGCGCCGgGc -3' miRNA: 3'- cAUGACGCGG-CUUaGCaCGCGGCgUa -5' |
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23659 | 5' | -57 | NC_005261.1 | + | 104160 | 0.69 | 0.657283 |
Target: 5'- -cACcGCGCCGuccgCGgGCGCCGCGc -3' miRNA: 3'- caUGaCGCGGCuua-GCaCGCGGCGUa -5' |
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23659 | 5' | -57 | NC_005261.1 | + | 83688 | 0.69 | 0.677915 |
Target: 5'- -aGCgcgcCGCCGAggCG-GCGCCGCAg -3' miRNA: 3'- caUGac--GCGGCUuaGCaCGCGGCGUa -5' |
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23659 | 5' | -57 | NC_005261.1 | + | 51474 | 0.69 | 0.677915 |
Target: 5'- cUGCUgGCGCUGAucacCG-GCGCCGCGc -3' miRNA: 3'- cAUGA-CGCGGCUua--GCaCGCGGCGUa -5' |
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23659 | 5' | -57 | NC_005261.1 | + | 132628 | 0.69 | 0.677915 |
Target: 5'- -cGCUgGCGCCGAGgacgCGgGCGCgGCGg -3' miRNA: 3'- caUGA-CGCGGCUUa---GCaCGCGgCGUa -5' |
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23659 | 5' | -57 | NC_005261.1 | + | 93930 | 0.68 | 0.688177 |
Target: 5'- -gGCuUGCGCCGuccgCGgGCGCCGCc- -3' miRNA: 3'- caUG-ACGCGGCuua-GCaCGCGGCGua -5' |
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23659 | 5' | -57 | NC_005261.1 | + | 122688 | 0.68 | 0.688177 |
Target: 5'- -aGCUGCGCCugcuccAUCGccGCGCCGCc- -3' miRNA: 3'- caUGACGCGGcu----UAGCa-CGCGGCGua -5' |
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23659 | 5' | -57 | NC_005261.1 | + | 130733 | 0.68 | 0.70855 |
Target: 5'- -cGCUGcCGCCGAcaugAUCGccGCGCUGCu- -3' miRNA: 3'- caUGAC-GCGGCU----UAGCa-CGCGGCGua -5' |
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23659 | 5' | -57 | NC_005261.1 | + | 59477 | 0.68 | 0.70855 |
Target: 5'- -gGCaGCGCCGGcgCG-GcCGCCGCGc -3' miRNA: 3'- caUGaCGCGGCUuaGCaC-GCGGCGUa -5' |
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23659 | 5' | -57 | NC_005261.1 | + | 47261 | 0.68 | 0.70855 |
Target: 5'- --cCUGCGCCGGcccgccggCGaagaGCGCCGCGUg -3' miRNA: 3'- cauGACGCGGCUua------GCa---CGCGGCGUA- -5' |
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23659 | 5' | -57 | NC_005261.1 | + | 131430 | 0.68 | 0.70855 |
Target: 5'- -aGCgGCGCCGGcgCcccccuUGCGCCGCGc -3' miRNA: 3'- caUGaCGCGGCUuaGc-----ACGCGGCGUa -5' |
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23659 | 5' | -57 | NC_005261.1 | + | 102466 | 0.68 | 0.718641 |
Target: 5'- -cGCgcagGCGCCGGAccuccUCGgcGCGCCGCc- -3' miRNA: 3'- caUGa---CGCGGCUU-----AGCa-CGCGGCGua -5' |
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23659 | 5' | -57 | NC_005261.1 | + | 120225 | 0.68 | 0.718641 |
Target: 5'- -cAgaGCGCCGAcgUGgaGCGCCGCu- -3' miRNA: 3'- caUgaCGCGGCUuaGCa-CGCGGCGua -5' |
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23659 | 5' | -57 | NC_005261.1 | + | 59002 | 0.68 | 0.728657 |
Target: 5'- -cGgUGCGCCGGGcUCGcccagcgGCGCCGCc- -3' miRNA: 3'- caUgACGCGGCUU-AGCa------CGCGGCGua -5' |
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23659 | 5' | -57 | NC_005261.1 | + | 120958 | 0.68 | 0.728657 |
Target: 5'- -gGCUcGCGCCccgcggGGcgCGUGcCGCCGCAg -3' miRNA: 3'- caUGA-CGCGG------CUuaGCAC-GCGGCGUa -5' |
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23659 | 5' | -57 | NC_005261.1 | + | 30181 | 0.68 | 0.738587 |
Target: 5'- -cGCUgcGCGCCGAggCG-GcCGCCGCGc -3' miRNA: 3'- caUGA--CGCGGCUuaGCaC-GCGGCGUa -5' |
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23659 | 5' | -57 | NC_005261.1 | + | 101632 | 0.68 | 0.738587 |
Target: 5'- ----cGCGCCGcggccgCGUcGCGCCGCAc -3' miRNA: 3'- caugaCGCGGCuua---GCA-CGCGGCGUa -5' |
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23659 | 5' | -57 | NC_005261.1 | + | 102949 | 0.68 | 0.738587 |
Target: 5'- -cGCUGCGgCGGcggccgCGgGCGCCGCGg -3' miRNA: 3'- caUGACGCgGCUua----GCaCGCGGCGUa -5' |
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23659 | 5' | -57 | NC_005261.1 | + | 104713 | 0.68 | 0.738587 |
Target: 5'- -gGCUGgacgGCCGAGggcgCGUcGUGCCGCGUg -3' miRNA: 3'- caUGACg---CGGCUUa---GCA-CGCGGCGUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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