Results 1 - 20 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23659 | 5' | -57 | NC_005261.1 | + | 42048 | 1.05 | 0.003503 |
Target: 5'- gGUACUGCGCCGAAUCGUGCGCCGCAUu -3' miRNA: 3'- -CAUGACGCGGCUUAGCACGCGGCGUA- -5' |
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23659 | 5' | -57 | NC_005261.1 | + | 85991 | 0.78 | 0.219129 |
Target: 5'- -aGCUGCGCCGccgacggggcGUCGUGCGCCaGCAg -3' miRNA: 3'- caUGACGCGGCu---------UAGCACGCGG-CGUa -5' |
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23659 | 5' | -57 | NC_005261.1 | + | 11120 | 0.76 | 0.286258 |
Target: 5'- ---aUGCGCCGGcagCGUGCGCCGCc- -3' miRNA: 3'- caugACGCGGCUua-GCACGCGGCGua -5' |
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23659 | 5' | -57 | NC_005261.1 | + | 51718 | 0.75 | 0.336864 |
Target: 5'- -aGCUGCGggGggUCGUGCGCaCGCAg -3' miRNA: 3'- caUGACGCggCuuAGCACGCG-GCGUa -5' |
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23659 | 5' | -57 | NC_005261.1 | + | 68878 | 0.74 | 0.368584 |
Target: 5'- ---gUGCGCCG--UCGUGCGCUGCGc -3' miRNA: 3'- caugACGCGGCuuAGCACGCGGCGUa -5' |
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23659 | 5' | -57 | NC_005261.1 | + | 104411 | 0.74 | 0.393684 |
Target: 5'- -aGC-GCGCCGAAaCG-GCGCCGCAc -3' miRNA: 3'- caUGaCGCGGCUUaGCaCGCGGCGUa -5' |
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23659 | 5' | -57 | NC_005261.1 | + | 88481 | 0.73 | 0.447074 |
Target: 5'- cGUGCcGCGCCGGAgc--GCGCCGCGc -3' miRNA: 3'- -CAUGaCGCGGCUUagcaCGCGGCGUa -5' |
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23659 | 5' | -57 | NC_005261.1 | + | 132955 | 0.73 | 0.447074 |
Target: 5'- -cGCUGCGCCGA--CGUG-GCCGCc- -3' miRNA: 3'- caUGACGCGGCUuaGCACgCGGCGua -5' |
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23659 | 5' | -57 | NC_005261.1 | + | 70646 | 0.72 | 0.456359 |
Target: 5'- -cGCgGCGCUGAGguUCG-GCGCCGCGg -3' miRNA: 3'- caUGaCGCGGCUU--AGCaCGCGGCGUa -5' |
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23659 | 5' | -57 | NC_005261.1 | + | 83301 | 0.72 | 0.465747 |
Target: 5'- -gGCUGCGCgGggUCGUGCaGCUcggGCGg -3' miRNA: 3'- caUGACGCGgCuuAGCACG-CGG---CGUa -5' |
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23659 | 5' | -57 | NC_005261.1 | + | 31786 | 0.71 | 0.524017 |
Target: 5'- gGUGCUGC-CCGcggcgcaGUGCGCCGCGc -3' miRNA: 3'- -CAUGACGcGGCuuag---CACGCGGCGUa -5' |
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23659 | 5' | -57 | NC_005261.1 | + | 58558 | 0.71 | 0.53401 |
Target: 5'- --cCUGCGCCG--UCGUG-GCCGCGa -3' miRNA: 3'- cauGACGCGGCuuAGCACgCGGCGUa -5' |
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23659 | 5' | -57 | NC_005261.1 | + | 85559 | 0.71 | 0.54407 |
Target: 5'- cUGCgGCGCCGcgagguUCG-GCGCCGCGa -3' miRNA: 3'- cAUGaCGCGGCuu----AGCaCGCGGCGUa -5' |
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23659 | 5' | -57 | NC_005261.1 | + | 118117 | 0.71 | 0.554191 |
Target: 5'- -cGCUGCGCCGc--CGgcucGCGCCGCu- -3' miRNA: 3'- caUGACGCGGCuuaGCa---CGCGGCGua -5' |
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23659 | 5' | -57 | NC_005261.1 | + | 86235 | 0.71 | 0.564367 |
Target: 5'- gGUGCcGCaGCCGAugcagcGUCGUGUGCgCGCAc -3' miRNA: 3'- -CAUGaCG-CGGCU------UAGCACGCG-GCGUa -5' |
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23659 | 5' | -57 | NC_005261.1 | + | 64829 | 0.7 | 0.574592 |
Target: 5'- -cGC-GCGCCGggUcCGcGCGCUGCAg -3' miRNA: 3'- caUGaCGCGGCuuA-GCaCGCGGCGUa -5' |
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23659 | 5' | -57 | NC_005261.1 | + | 95784 | 0.7 | 0.59516 |
Target: 5'- -cGCUGCGCCGGcgCGcugcuagccgGCGCCgGCGg -3' miRNA: 3'- caUGACGCGGCUuaGCa---------CGCGG-CGUa -5' |
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23659 | 5' | -57 | NC_005261.1 | + | 59665 | 0.7 | 0.59516 |
Target: 5'- -gACUGCgGCCGggUCGUcgaaGCCGCc- -3' miRNA: 3'- caUGACG-CGGCuuAGCAcg--CGGCGua -5' |
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23659 | 5' | -57 | NC_005261.1 | + | 106893 | 0.7 | 0.605489 |
Target: 5'- cUGCaGCGCCuGcGUCGUccGCGCCGCGg -3' miRNA: 3'- cAUGaCGCGG-CuUAGCA--CGCGGCGUa -5' |
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23659 | 5' | -57 | NC_005261.1 | + | 106693 | 0.7 | 0.626201 |
Target: 5'- -gGCcGCGCCGAucgCGUcccaGCGCUGCAg -3' miRNA: 3'- caUGaCGCGGCUua-GCA----CGCGGCGUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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